View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_2D_low_71 (Length: 214)
Name: NF2853_2D_low_71
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 25978773 - 25978606
Alignment:
| Q |
1 |
tattgccgtggtattaagaagtgctgaaaaaggagccaccaaaaactctcggatttggaagaatgttaaacccttcttcgagtggcttcagagtgcaatt |
100 |
Q |
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| T |
25978773 |
tattgccgtggtattaagaagtgctgaaaaaggagccaccaaaaactctcggatttggaagaatgttaaacccttcttcgagtggcttcagagtgcgatt |
25978674 |
T |
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| Q |
101 |
cagagacggaggaagagttgtgtgctggaattctttacatctgttgctaattagtttgtctcttttat |
168 |
Q |
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| T |
25978673 |
cagagacggaggaagagttgtgtgctggaattctttacatctgttgctaattagtttgtgtcttttat |
25978606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 25973375 - 25973271
Alignment:
| Q |
44 |
aactctcggatttggaagaatgttaaacccttcttcgagtggcttcagagtgcaattcagagacggaggaagagttgtgtgctggaattctttacatctg |
143 |
Q |
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| T |
25973375 |
aactctcagatttggaagaatgttaaacccttcttcgagtggcttcagagtgcgaatcagagacggaggaagagtcgtgtgctggaattgtttaaatttg |
25973276 |
T |
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| Q |
144 |
ttgct |
148 |
Q |
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||||| |
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| T |
25973275 |
ttgct |
25973271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 31829785 - 31829899
Alignment:
| Q |
1 |
tattgccgtggtattaagaagtgctgaaaaaggagccaccaaaaactctcggatttggaagaatgttaaacccttcttcgagtggcttcagagtgca-at |
99 |
Q |
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|||||| ||||||| |||||| ||||||| |||| ||||||||| ||| ||||||||||||||| ||||||||| | || ||||||||||||||| | |
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| T |
31829785 |
tattgcagtggtatcaagaagggctgaaa--ggagacaccaaaaatgctcagatttggaagaatgtgaaacccttcattgaatggcttcagagtgcagag |
31829882 |
T |
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| Q |
100 |
tcagagacggaggaaga |
116 |
Q |
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|||||| |||||||||| |
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| T |
31829883 |
tcagagtcggaggaaga |
31829899 |
T |
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