View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_2D_low_79 (Length: 205)
Name: NF2853_2D_low_79
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_low_79 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 24930099 - 24929907
Alignment:
| Q |
12 |
gagttggacaagtcaccttaaccacattattgttgagttgagaatccacatatttggaaatacaatcaacacaaaagagatggttgcaactctttctttt |
111 |
Q |
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| T |
24930099 |
gagttggacaagtcaccttaaccacattattgttgagttgagaatctacatatttggaaatacaatcaacacaaaagagatggttgcaactctttctttt |
24930000 |
T |
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| Q |
112 |
gaacatatcaaaatcagttttcaaatcaaagcatataccacatgagcttcttgaggactcaccaattaacataccagtggtgaattcttctggc |
205 |
Q |
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| T |
24929999 |
gaacatatcaaaatcagttttcaaatcaaagcatataccacatgagcttcttgaggactcaccaatt-acataccagtggtgaattcttctggc |
24929907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 24976778 - 24976941
Alignment:
| Q |
12 |
gagttggacaagtcaccttaaccacattattgttgagttgagaatccacatatttggaaatacaatcaacacaaaagagatggttgcaactctttctttt |
111 |
Q |
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| T |
24976778 |
gagttggacaagtcaccttaaccacattgttgttaatttgagaaaccacatatttggaaatacattcaacacaaaagaggtggttgcaactctttctttt |
24976877 |
T |
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| Q |
112 |
gaacatatcaaaatcagttttcaaatcaaagcatataccacatgagcttcttgaggactcacca |
175 |
Q |
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| T |
24976878 |
gaacatatctgaatctgttttcaaatcaaagcatataccacataagcttcgtgaggattcacca |
24976941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 1833 - 2025
Alignment:
| Q |
12 |
gagttggacaagtcaccttaaccacattattgttgagttgagaatccacatatttggaaatacaatcaacacaaaagagatggttgcaactctttctttt |
111 |
Q |
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| T |
1833 |
gagttggacaagtcaccttaaccacattattgttgagttgagaatccacatatttggaaatacaatcaacacaaaagagatggttgcaactctttctttt |
1932 |
T |
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| Q |
112 |
gaacatatcaaaatcagttttcaaatcaaagcatataccacatgagcttcttgaggactcaccaattaacataccagtggtgaattcttctgg |
204 |
Q |
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| T |
1933 |
gaacatatccaaatcagttttcaaatcaaagcatataccacatgagcttcttgaggattcaccaattaacatcttagtggtgaattcttctgg |
2025 |
T |
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