View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2853_2D_low_8 (Length: 523)
Name: NF2853_2D_low_8
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_2D_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 17777345 - 17776846
Alignment:
| Q |
1 |
ttgctgaattgaagttgcggtgttctggtttgggtcttctcgaccttgggcagtgaccatgnnnnnnnggttggccatgggctttcgggccgcaagtttg |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
17777345 |
ttgctgaattgaagttgcagtgttctggtttgggtcttctcgaccttgggcagtgaccatgtttttttggttggccatgggttttcgggccgcaagtttg |
17777246 |
T |
|
| Q |
101 |
ctcttctggaaaacaacagctgcgtttccaaagataaagtcaacggtaccggtaatgtatgagtcacggtaaaattgtcggttggagtgtgcatagagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17777245 |
ctcttctggaaaacaacagctgcgtttccaaagataaagtcaacggtaccggtaatgtatgagtcacggtaaaattgtcggttggagtgtgcatagagag |
17777146 |
T |
|
| Q |
201 |
tgtcttgaaatgcatcaattttgcagcggttgatgacggattgatcagcaccgacacgaagagcaactgcctggtgcttctgtgggcctgctgtgttttg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17777145 |
tgtcttgaaatgcatcaattttgcagcggttgatgacggattgatcagcgccgacacgaagagcaactgcctggtgcttctgtgggcctgctgtgttttg |
17777046 |
T |
|
| Q |
301 |
gaacctaatgtcctgagctataaacccatctccaacagcagctacaaaaccaaattatacatcaataaaaatcactatgtcagagaatcggaaatggtaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17777045 |
gaacctaatgtcctgagctataaacccatctccaacagcagctacaaaaccaaattatacatcaataaaaatcactatgtc--agaatcggaaatggtaa |
17776948 |
T |
|
| Q |
401 |
atacagagaaggggnnnnnnnntacataccaacagttgcacttttgaaggtggttgttccatcgatgaaatttaagctgcctgtgattattgttgcgtcc |
500 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17776947 |
atacagagaagggg--aaaaaatacataccaacagttgcacttttgaaggtggttgttccatcgatgaaatttaagctgcctgtgattattgttgcatcc |
17776850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 17808038 - 17807538
Alignment:
| Q |
1 |
ttgctgaattgaagttgcggtgttctggtttgggtcttctcgaccttgggcagtgaccatgnnnnnnnggttggccatgggctttcgggccgcaagtttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||| | |||||| |
|
|
| T |
17808038 |
ttgctgaattgaagttgcggtgttctggtttgggtctattcgaccctgggctgtgaccatgttgttttggttggccatgggctttcgggccacgagtttg |
17807939 |
T |
|
| Q |
101 |
ctcttctggaaaacaacagctgcgtttccaaagataaagtcaacggtaccggtaatgtatgagtcacggtaaaattgtcggttggagtgtgcatagagag |
200 |
Q |
| |
|
| |||||| || ||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| |||||| || |||| |
|
|
| T |
17807938 |
cacttctgcaacacaacagctgcgtctccaaagataaagtcaatggtaccggtaatgaaggagtcacggtaaaattgtcggttggtgtgtgcgtatagag |
17807839 |
T |
|
| Q |
201 |
tgtcttgaaatgcatcaattttgcagcggttgatgacggattgatcagcaccgacacgaagagcaactgcctggtgcttctgtgggcctgctgtgttttg |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||| ||| |||||| ||||| || |||||||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
17807838 |
tgtcttgaaatgcatcaattttgcaacggttaatgacagatcgatcagagccgacgcgcagagcaactgcctgatgcttctgtggacctgccgtgttttg |
17807739 |
T |
|
| Q |
301 |
gaacctaatgtcctgagctataaacccatctccaacagcagctacaaaaccaaattatacatcaataaaaatcactatgtcagagaatcggaaatggtaa |
400 |
Q |
| |
|
||| | |||||||||||||||||||| ||| |||||||||||||||||||||||||||| | ||| ||||||| | | ||| || |||| ||||| |
|
|
| T |
17807738 |
gaatccaatgtcctgagctataaaccaatccccaacagcagctacaaaaccaaattatatacgaatcaaaatcaatgtcatagaaaaattgaaacggtaa |
17807639 |
T |
|
| Q |
401 |
atacagagaaggggnnnnnnnntacataccaacagttgcacttttgaaggtggttgttccatcgatgaaatttaagctgcctgtgattattgttgcgtcc |
500 |
Q |
| |
|
|||| || ||||| |||||||||||||||| ||| ||||||| ||||||||| | | |||||||||||||||||||||| ||||| ||| |
|
|
| T |
17807638 |
atactgacaagggaaaaaact---cataccaacagttgcagtttggaaggtgcctgttccatcaacgtaatttaagctgcctgtgattatcgttgcatcc |
17807542 |
T |
|
| Q |
501 |
atac |
504 |
Q |
| |
|
|||| |
|
|
| T |
17807541 |
atac |
17807538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 69 - 352
Target Start/End: Complemental strand, 17821874 - 17821591
Alignment:
| Q |
69 |
ggttggccatgggctttcgggccgcaagtttgctcttctggaaaacaacagctgcgtttccaaagataaagtcaacggtaccggtaatgtatgagtcacg |
168 |
Q |
| |
|
||||||||||||| || |||||| | | |||| ||||||||| ||||||||||| ||||||||||| ||||||| |||||| |||||| |||||||| |
|
|
| T |
17821874 |
ggttggccatgggtttacgggccaccaacttgcacttctggaacacaacagctgcatttccaaagatgaagtcaatggtacctgtaatgacagagtcacg |
17821775 |
T |
|
| Q |
169 |
gtaaaattgtcggttggagtgtgcatagagagtgtcttgaaatgcatcaattttgcagcggttgatgacggattgatcagcaccgacacgaagagcaact |
268 |
Q |
| |
|
|||||| || |||||||||||||| || |||||||||||||| || ||||| ||| ||||||||||| ||||| |||| |||||||| ||||| ||| |
|
|
| T |
17821774 |
gtaaaactgccggttggagtgtgcgtaaagagtgtcttgaaaggcgtcaatgcggcaacggttgatgacagattggtcagagccgacacggagagccact |
17821675 |
T |
|
| Q |
269 |
gcctggtgcttctgtgggcctgctgtgttttggaacctaatgtcctgagctataaacccatctccaacagcagctacaaaacca |
352 |
Q |
| |
|
||||||||||| || |||||| | |||||||||| ||| || || |||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
17821674 |
gcctggtgctttgctgcgcctgccatattttggaaccaaatatcttgtgctataaacccatccccaaccgcagctgcaaaacca |
17821591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 425 - 502
Target Start/End: Complemental strand, 17821392 - 17821315
Alignment:
| Q |
425 |
cataccaacagttgcacttttgaaggtggttgttccatcgatgaaatttaagctgcctgtgattattgttgcgtccat |
502 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||| |||||||| ||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
17821392 |
cataccaacagttgaacttttgaaggtcgttgtcccatcgataaaatttaagtttcctgtgattattgttgcatccat |
17821315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University