View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2853_2D_low_9 (Length: 523)

Name: NF2853_2D_low_9
Description: NF2853_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2853_2D_low_9
NF2853_2D_low_9
[»] chr1 (3 HSPs)
chr1 (20-497)||(39210040-39210502)
chr1 (356-488)||(24036791-24036927)
chr1 (169-240)||(7673907-7673978)
[»] chr8 (3 HSPs)
chr8 (25-330)||(27510494-27510799)
chr8 (356-515)||(27513624-27513783)
chr8 (397-515)||(8675126-8675245)
[»] chr3 (1 HSPs)
chr3 (385-494)||(9461180-9461298)
[»] chr2 (2 HSPs)
chr2 (366-478)||(38950770-38950885)
chr2 (199-240)||(27592764-27592805)
[»] chr6 (2 HSPs)
chr6 (430-482)||(18331979-18332031)
chr6 (361-428)||(18331878-18331945)
[»] chr4 (2 HSPs)
chr4 (189-327)||(42091774-42091912)
chr4 (146-304)||(31949210-31949368)


Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 20 - 497
Target Start/End: Complemental strand, 39210502 - 39210040
Alignment:
Q  20 cttaacaattgtgttatagaag---gtagtgggaagtaaaagggcagaaaaaccatatggtatgaatggattaacgtaagcatgagcactatggttctgc 116  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  39210502 cttaacaattgtgttatagaagaaggtagtgggaagtaaaagggcagaagaaccatatggtatgaagggatta-cgtaagcatgagcactatggttctgc 39210404  T
Q  117 aacaacattctttgtggaggagtgctttgaggatacaccaactcatctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210403 aacaacattctttgtggaggagtgctttgaggatacaccaactcatctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatga 39210304  T
Q  217 cagtgatccaagtaccagccaaaagtcgataaaattctttaaaaaatgtccaaccgtcggtaaaatagactttctcgttcctctttttgacagccacctc 316  Q
    |||||||||||||||||||||||||   ||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  39210303 cagtgatccaagtaccagccaaaagcacataaaattcttta-aaaatgtccaaccgtcagtaaaatagactttcacgttcctctttttgacagccacctc 39210205  T
Q  317 aaactcattcttgtatacatcaaatggagcatccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaa 416  Q
    ||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  39210204 aaagtcattcttgtatacatcaaatggaacctccattataatatatattctacactcacaacattggaatctaatctattcatattcaaattag------ 39210111  T
Q  417 acaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaaggt 497  Q
              ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210110 ----------ttcaaaaaaatcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaaggt 39210040  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 356 - 488
Target Start/End: Original strand, 24036791 - 24036927
Alignment:
Q  356 aatatatattctacactcacaacattggaatctaatctattcatattcaaa-ttagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca 454  Q
    ||||||||||||||||||| ||||||| ||||| || |||| |||| |||| |||| ||||||||||||||| | |||||||||||||||||||||||||    
T  24036791 aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca 24036889  T
Q  455 ----ggcttgcagatagtttcatcaacttcccttgtat 488  Q
        |||||||||||||||||||||||||  |||||||    
T  24036890 ggatggcttgcagatagtttcatcaacttagcttgtat 24036927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 7673907 - 7673978
Alignment:
Q  169 gcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa 240  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||| |  |||| |||||||||||||||||    
T  7673907 gcatatttctaacttcaaacagaaaaatgtgtcgatttgaaaaaataattgtgacccaagtaccagccaaaa 7673978  T

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Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 25 - 330
Target Start/End: Original strand, 27510494 - 27510799
Alignment:
Q  25 caattgtgttatagaaggtagtgggaagtaaaagggcagaaaaaccatatggtatgaatggattaacgtaagcatgagcactatggttctgcaacaacat 124  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||| |||||||||||||||||||||||||||||    
T  27510494 caattgtgttataaaaggtagtgggaagtaaaagggcagaagaaccatatggtatgaaggaatttacgtacgcatgagcactatggttctgcaacaacat 27510593  T
Q  125 tctttgtggaggagtgctttgaggatacaccaactcatctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27510594 tctttgtggaggagtgctttgaggatacaccaactcatctccatgtatattcctaacttcaaacagaaaaaggtgtcgattttcaaaaatgacagtgatc 27510693  T
Q  225 caagtaccagccaaaagtcga-taaaattctttaaaaaatgtccaaccgtcggtaaaatagactttctcgttcctctttttgacagccacctcaaactca 323  Q
    ||||||||||||||||| | | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27510694 caagtaccagccaaaagcccattaaaattcttt-aaaaatgtccaaccgtcagtaaaatagactttctcgttcctctttttgacagccacctcaaactca 27510792  T
Q  324 ttcttgt 330  Q
    |||||||    
T  27510793 ttcttgt 27510799  T

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Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 356 - 515
Target Start/End: Original strand, 27513624 - 27513783
Alignment:
Q  356 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag 455  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27513624 aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag 27513723  T
Q  456 gcttgcagatagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcatctc 515  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27513724 gcttgcaggtagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctc 27513783  T

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Target: chr8; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 397 - 515
Target Start/End: Complemental strand, 8675245 - 8675126
Alignment:
Q  397 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttcccttgtattttcaa-g 495  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||      
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaacttcccttgtattctcaatc 8675146  T
Q  496 gtcttcggcaccttcatctc 515  Q
    ||||||||||||||| ||||    
T  8675145 gtcttcggcaccttcttctc 8675126  T

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Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 385 - 494
Target Start/End: Complemental strand, 9461298 - 9461180
Alignment:
Q  385 atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 475  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 9461199  T
Q  476 acttcccttgtattttcaa 494  Q
    |||||| |  |||||||||    
T  9461198 acttccttcttattttcaa 9461180  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 366 - 478
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
Q  366 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt 459  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||       ||||||||||||||||   |||||||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt 38950866  T
Q  460 gcagatagtttcatcaact 478  Q
    |||||||||||||||||||    
T  38950867 gcagatagtttcatcaact 38950885  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 27592805 - 27592764
Alignment:
Q  199 gtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa 240  Q
    ||||||||||||||||||||||| |||||| |||| ||||||    
T  27592805 gtcgatttgcaaaaatgacagtggtccaagaaccaaccaaaa 27592764  T

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Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 430 - 482
Target Start/End: Original strand, 18331979 - 18332031
Alignment:
Q  430 aaaaaactcaacctcttcatcatcaggcttgcagatagtttcatcaacttccc 482  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18331979 aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaacttccc 18332031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 428
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
Q  361 atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 428  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 327
Target Start/End: Original strand, 42091774 - 42091912
Alignment:
Q  189 agaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtc-gataaaattctttaaaaaatgtccaaccgtcggtaaaatagact 287  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||  | |  ||||||||| |||| | | |||||| ||   |||||| |||    
T  42091774 agaaaaaggcgtcgatttgcaaaaatgacagtgatccaagaaccagccaaaatcctgtaaaaattcttcaaaaca-gcccaaccatcatcaaaataaact 42091872  T
Q  288 ttctcgttcctctttttgacagccacctcaaactcattct 327  Q
    ||| ||||||||||||  ||||| ||||||| ||||||||    
T  42091873 ttcccgttcctcttttccacagctacctcaatctcattct 42091912  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 304
Target Start/End: Complemental strand, 31949368 - 31949210
Alignment:
Q  146 aggatacaccaactcatctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcga 245  Q
    |||||||||||| | | ||||||||| ||| || ||  | | ||||||||| ||||||||||||||||| |  |||||||||| |||| ||||||  | |    
T  31949368 aggatacaccaattaaactccatgcagatttcttaccaccatcagaaaaagatgtcgatttgcaaaaataattgtgatccaagcaccacccaaaatccca 31949269  T
Q  246 -taaaattctttaaaaaatgtccaaccgtcggtaaaatagactttctcgttcctcttttt 304  Q
     ||||  ||||| |||||||||||||| || |||||||| ||  || ||||| |||||||    
T  31949268 ttaaagctcttt-aaaaatgtccaaccatcagtaaaataaaccctcccgttcttcttttt 31949210  T

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