View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_high_1 (Length: 541)
Name: NF2853_high_1
Description: NF2853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 124 - 522
Target Start/End: Original strand, 21441352 - 21441760
Alignment:
| Q |
124 |
ttctaaataaaacataaaaaattcaaattttcaaatacaaattatatgaagaatgcacaaatttaagaaattcattctcgttcaacgtaagagacacata |
223 |
Q |
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| T |
21441352 |
ttctaaataaaacataaaaaattcgaattttcagatacaaattataggaataatgcacaaatttaagaaattcattctcgttcagcgtaagagacacata |
21441451 |
T |
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| Q |
224 |
cactatgaaacattgacacatacacgaacac------caaacatgacat-----tgtcgtcaatgccggtaataatttttataaaaatgacatgattaaa |
312 |
Q |
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| T |
21441452 |
cactatgaaacattgacacattcacgaacacaaacaccaaacatgacattacattgtcgtcaatgccggtaataatttttataaaaatgacataattaaa |
21441551 |
T |
|
| Q |
313 |
tgtaaccatacgttctggtttcggacattgaagattgaacacatttgatgagacatgtcggtgatagagagtatatacatgaattaagcttaaaatacat |
412 |
Q |
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| T |
21441552 |
tgtaaccacacgttctggtttcggacattgaagattgaacacatttgatgagacatgtcggtgatagagagcatatacatgaattaagcttaaaatacat |
21441651 |
T |
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| Q |
413 |
acaatcacaaacacgacatttacactgatactgatacgtccacactcggaataatatgnnnnnnntgacgtaattgaatataatcacatatgtcattgtt |
512 |
Q |
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| T |
21441652 |
acaatcatagacacgacatttacactgatactgatacgtccacactcggaataatatg-aaaaaatgacgtaattgaatataatcacatatgtcattgtt |
21441750 |
T |
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| Q |
513 |
agacattaac |
522 |
Q |
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| T |
21441751 |
agacattaac |
21441760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 21440854 - 21440967
Alignment:
| Q |
19 |
ccagcaatactgtcgctttagtttttgaattaatcaaaattacaatgaacattctcaaatttgtcactccttagtcacacatttacataccaaaatgact |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
21440854 |
ccagcaatactgtcgctttagtttttgaattaatcaaaattacaatgaacattctcaaatgtgtctctccttagtcacacatttacataccaaaatgact |
21440953 |
T |
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| Q |
119 |
gtttattctaaata |
132 |
Q |
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| T |
21440954 |
gtttattctaaata |
21440967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 232
Target Start/End: Original strand, 21440211 - 21440383
Alignment:
| Q |
69 |
attctcaaatttgtcactccttagtcacacatttacataccaaaatgactgtttattctaaataaaacataaaaa------attcaaattttcaaataca |
162 |
Q |
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|||||||||| |||| ||| || ||||||||||||||| ||||||||| |||||||||||||| ||| | ||||| | | |||| || | |||| |
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| T |
21440211 |
attctcaaatgtgtctctcatttgtcacacatttacatgccaaaatgattgtttattctaaattaaaaaaaaaaactaaagaatttaattctccattaca |
21440310 |
T |
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| Q |
163 |
aattat---atgaagaatgcacaaatttaagaaattcattctcgttcaacgtaagagacacatacactatgaa |
232 |
Q |
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| |||| | ||||||||||||| ||||||||||||||||| | || | ||||| |||||||||||||||| |
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| T |
21440311 |
agttataaaaagaagaatgcacaactttaagaaattcattctattacagcttaagatacacatacactatgaa |
21440383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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