View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_high_16 (Length: 208)
Name: NF2853_high_16
Description: NF2853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 32146871 - 32147068
Alignment:
| Q |
1 |
aggcaaggttaaaaccaaggtatcaccatccttggttccaagttataaaatcttatcaattgttttgaaccagacatttctgcacaaaaagtattagtgc |
100 |
Q |
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| T |
32146871 |
aggcaaggttaaaaccaaggtatcaccaaccttggttccaagttataaaatctcatcaattgttttgaaccagacatttcttcacaaaaagtattagtgc |
32146970 |
T |
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| Q |
101 |
aaag---tgccatgtccaaatgacgatcgaaattgtagcattacttgtgtaaatttgaggtatcctaagggtgtgtattgtggttggtctggtctgtg |
195 |
Q |
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| T |
32146971 |
aaagtgctgccatgtccaaatgacgatcgaaattgtagtatcacttgtgtaaatttgaggtatcctaagggtgtgtattgcggttggtctggtctgtg |
32147068 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 42255643 - 42255712
Alignment:
| Q |
100 |
caaagtgccatgtccaaatgacgatcgaaattgtagcattacttgtgtaaatttgaggtatcctaagggtg |
170 |
Q |
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| T |
42255643 |
caaagggccatgtccaaatgacgagc-aagttgtagtgttacttgcataaatttgaggtatcttaagggtg |
42255712 |
T |
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