View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2853_low_10 (Length: 274)

Name: NF2853_low_10
Description: NF2853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2853_low_10
NF2853_low_10
[»] chr4 (4 HSPs)
chr4 (136-264)||(10577449-10577577)
chr4 (53-176)||(34332655-34332778)
chr4 (111-179)||(7144169-7144237)
chr4 (20-56)||(10577576-10577612)
[»] chr7 (8 HSPs)
chr7 (53-250)||(5637210-5637407)
chr7 (54-180)||(6272196-6272324)
chr7 (117-163)||(18497054-18497100)
chr7 (52-179)||(11466998-11467124)
chr7 (89-180)||(22334285-22334376)
chr7 (67-177)||(21536516-21536625)
chr7 (134-180)||(30406639-30406685)
chr7 (87-179)||(13709070-13709162)
[»] chr1 (6 HSPs)
chr1 (51-259)||(33175580-33175786)
chr1 (52-241)||(34931905-34932095)
chr1 (86-179)||(19256933-19257025)
chr1 (89-192)||(14581153-14581256)
chr1 (88-178)||(30743499-30743589)
chr1 (52-179)||(23420571-23420699)
[»] chr5 (3 HSPs)
chr5 (51-251)||(22930887-22931085)
chr5 (212-251)||(30791479-30791518)
chr5 (214-251)||(14207842-14207879)
[»] chr8 (4 HSPs)
chr8 (85-177)||(13581946-13582038)
chr8 (100-179)||(8541721-8541800)
chr8 (56-177)||(24926750-24926873)
chr8 (214-249)||(35134691-35134726)
[»] chr3 (4 HSPs)
chr3 (50-133)||(26419870-26419955)
chr3 (51-132)||(11475955-11476037)
chr3 (98-178)||(8713956-8714036)
chr3 (98-178)||(9065843-9065923)
[»] chr6 (4 HSPs)
chr6 (50-178)||(16440417-16440544)
chr6 (96-178)||(17859081-17859163)
chr6 (117-180)||(22263444-22263508)
chr6 (51-141)||(22557936-22558028)
[»] chr2 (1 HSPs)
chr2 (127-183)||(19593107-19593163)
[»] scaffold0804 (1 HSPs)
scaffold0804 (89-192)||(870-973)
[»] scaffold0280 (1 HSPs)
scaffold0280 (212-260)||(17223-17271)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 136 - 264
Target Start/End: Complemental strand, 10577577 - 10577449
Alignment:
Q  136 ttgatttagaagcgtaacgacgattagaaaatccttgaatcccccattttgtctttgctcggattaaagatgttagttattagtttatgacgtgtctttt 235  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||| ||||||||||||||||| | |||||||||    
T  10577577 ttgatttagaagcgtaacgacgattagaaaatccttgaatcccctattttgtctttgctcaaattaaagaggttagttattagtttattatgtgtctttt 10577478  T
Q  236 gatttaagaaagtagactatgaccctatg 264  Q
    |||||||||||||||| ||||||||||||    
T  10577477 gatttaagaaagtagaatatgaccctatg 10577449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 176
Target Start/End: Original strand, 34332655 - 34332778
Alignment:
Q  53 aatttattagaagtaaataaaacagaaaagataaagtggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgtaa 152  Q
    ||||||||||||||| ||||||   ||||||||||||||||| |  ||||||||| |  |||  ||||||||||||||||||||||||| ||| ||||||    
T  34332655 aatttattagaagtacataaaaataaaaagataaagtggttgaagagttttaattgtcttgcctaatgcgagattaggttggtttgattcagatgcgtaa 34332754  T
Q  153 cgacgattagaaaatccttgaatc 176  Q
    | | ||||||   |||||||||||    
T  34332755 caaagattagggtatccttgaatc 34332778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 7144237 - 7144169
Alignment:
Q  111 ctgcacaatgcgagattaggttggtttgatttagaagcgtaacgacgattagaaaatccttgaatcccc 179  Q
    |||| ||||| |||||||||||||||||||||| | | ||||||||||||||  |||| ||||||||||    
T  7144237 ctgcccaatgtgagattaggttggtttgatttaaatgtgtaacgacgattagggaatcattgaatcccc 7144169  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 10577612 - 10577576
Alignment:
Q  20 aggcacacacctcatgtgatagaatgttatcggaatt 56  Q
    |||||||||||||||||||||||||||||||||||||    
T  10577612 aggcacacacctcatgtgatagaatgttatcggaatt 10577576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 250
Target Start/End: Complemental strand, 5637407 - 5637210
Alignment:
Q  53 aatttattagaagtaaataaaacagaaaagat-aaagtggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgta 151  Q
    ||||||||||||||||||| || | ||||||| ||||||||||||  ||| ||||| |  |||  | ||||||||||||||||| ||||| ||| |||||    
T  5637407 aatttattagaagtaaatagaatataaaagatgaaagtggttgtagcgttataattgtcttgcctagtgcgagattaggttggtctgattcagatgcgta 5637308  T
Q  152 acgacgattagaaaatccttgaatcccccattttgtctttgctcggattaaagatgttagttattagtttatgacgtgtcttttgatttaagaaagtag 250  Q
    |||||||||||| |||||||||||||||| |||  |||||| | | ||||| |  |||||||| ||||||||||| |||||||||||||||||||||||    
T  5637307 acgacgattagagaatccttgaatccccc-tttcatctttgttggaattaacgcagttagttactagtttatgacatgtcttttgatttaagaaagtag 5637210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 6272196 - 6272324
Alignment:
Q  54 atttattagaa-gtaaataaaacagaaaagat-aaagtggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgta 151  Q
    ||||||||||| |||||||||| || |||||| |||||||||| | ||||| ||||     || ||||| |||||||||||||||||||| |||  ||||    
T  6272196 atttattagaatgtaaataaaagaggaaagatgaaagtggttgcatggtttaaattgcctggcccaatgtgagattaggttggtttgattcagatacgta 6272295  T
Q  152 acgacgattagaaaatccttgaatccccc 180  Q
    |||||||||||| |||| |||||||||||    
T  6272296 acgacgattagagaatctttgaatccccc 6272324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 18497100 - 18497054
Alignment:
Q  117 aatgcgagattaggttggtttgatttagaagcgtaacgacgattaga 163  Q
    ||||||||||||||||||||||||| | | |||||||||||||||||    
T  18497100 aatgcgagattaggttggtttgattcatatgcgtaacgacgattaga 18497054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 11466998 - 11467124
Alignment:
Q  52 gaatttattagaagtaaataaaacagaaaagat-aaagtggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgt 150  Q
    ||||||||||||||||| || || |||||  || |||||||| | |||||||| ||| || ||  ||||||||||||| |||  ||||||| ||| ||||    
T  11466998 gaatttattagaagtaa-tagaatagaaacaatgaaagtggtagcaaggttttgattgtt-tgtccaatgcgagattaagtttatttgattcagatgcgt 11467095  T
Q  151 aacgacgattagaaaatccttgaatcccc 179  Q
    ||||||||||||  ||||||| |||||||    
T  11467096 aacgacgattagggaatccttaaatcccc 11467124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 22334285 - 22334376
Alignment:
Q  89 tggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgtaacgacgattagaaaatccttgaatccccc 180  Q
    |||||| | |||||||||| |||||| |||||||||||||||||   |||||| | ||| ||||||  ||||||  ||||||| ||||||||    
T  22334285 tggttgcagggttttaattgttctgcccaatgcgagattaggttttgttgattcaaaagagtaacggtgattagggaatcctttaatccccc 22334376  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 177
Target Start/End: Original strand, 21536516 - 21536625
Alignment:
Q  67 aaataaaacagaaaagataaagtggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgtaacgacgattagaaaa 166  Q
    |||||||| ||||||||  ||||||||||| | |||||||| | | || ||||||||||||||||| |  ||||| ||| |  |||| ||||||| | ||    
T  21536516 aaataaaagagaaaagaccaagtggttgtaggcttttaattgtgcagcccaatgcgagattaggtttggctgattaagatgtttaacaacgatta-agaa 21536614  T
Q  167 tccttgaatcc 177  Q
    |||||||||||    
T  21536615 tccttgaatcc 21536625  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 30406685 - 30406639
Alignment:
Q  134 gtttgatttagaagcgtaacgacgattagaaaatccttgaatccccc 180  Q
    |||||||||||||| |||||| |||||||| ||| ||||||||||||    
T  30406685 gtttgatttagaagtgtaacggcgattagagaattcttgaatccccc 30406639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 13709162 - 13709070
Alignment:
Q  87 agtggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgtaacgacgattagaaaatccttgaatcccc 179  Q
    |||||||| | |||||||||| |  ||  ||||||||||||| |||  | |||||  |||| ||||||||||||||  |||||||||||||||    
T  13709162 agtggttgcatggttttaattgtcttgttcaatgcgagattatgtttttgtgattcggaagtgtaacgacgattagggaatccttgaatcccc 13709070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 51 - 259
Target Start/End: Original strand, 33175580 - 33175786
Alignment:
Q  51 ggaatttattagaagtaaataaaacagaaaagataaagtggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgt 150  Q
    |||||||||||||||||||||||  | || |||||||| ||| |||||||||||||| | | || |||| |||||||| |||||||||| | ||| ||||    
T  33175580 ggaatttattagaagtaaataaactaaaagagataaagcggtggtaaggttttaattgtcccgctcaatacgagattatgttggtttgactcagatgcgt 33175679  T
Q  151 aacgacgattagaaaatccttgaatcccccattttgtctttgctcggattaaagatgttagttattagtttatgacgtgtcttttgatttaagaaagtag 250  Q
    |||||||||||| |||||||||||||||| |||   |||||| | | ||||| |  |||| ||||||||||||||| |||| |||||||||  ||| |||    
T  33175680 aacgacgattaggaaatccttgaatcccc-attccttctttgttggaattaatgcggttaattattagtttatgacttgtc-tttgatttacaaaattag 33175777  T
Q  251 actatgacc 259  Q
    | |||||||    
T  33175778 aatatgacc 33175786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 34931905 - 34932095
Alignment:
Q  52 gaatttattagaagtaaataaaacagaaaagat-aaagtggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgt 150  Q
    ||||||||||||||||||||||| | ||||||| | |||||||| | ||||||||||  | ||| |||||||| |||||||||||| |||| |   ||||    
T  34931905 gaatttattagaagtaaataaaatataaaagatgagagtggttgcagggttttaattggtttgctcaatgcgatattaggttggttggattcaagtgcgt 34932004  T
Q  151 aacgacgattagaaaatccttgaatcccccattttgtctttgctcggattaaagatgttagttattagtttatgacgtgtcttttgattta 241  Q
    | || ||||||   ||||||| |||||||  ||| ||||||| | | ||||  | ||||  |||||||||||||||  |||||||||||||    
T  34932005 agcggcgattaaggaatccttaaatccccactttcgtctttgttggaattattgttgttgattattagtttatgacccgtcttttgattta 34932095  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 179
Target Start/End: Original strand, 19256933 - 19257025
Alignment:
Q  86 aagtggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgtaacgacgattagaaaatccttgaatcccc 179  Q
    ||||||||||| |||||||||| |||||| |||| |||||||| |||  | ||||||||||| |||||||||||||   |||||||||| ||||    
T  19256933 aagtggttgtagggttttaattgttctgctcaatacgagattatgtt-ttgtgatttagaagtgtaacgacgattatggaatccttgaaccccc 19257025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 14581256 - 14581153
Alignment:
Q  89 tggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgtaacgacgattagaaaatccttgaatcccccattttgtc 188  Q
    |||||| | ||||||||||||  ||||||||||||| ||||||| | |||||| |||    ||||  |||||||  ||||||||||||||||| || |||    
T  14581256 tggttgcagggttttaattatcttgcacaatgcgaggttaggtttgattgattcagatatttaactgcgattagggaatccttgaatcccccacttcgtc 14581157  T
Q  189 tttg 192  Q
    ||||    
T  14581156 tttg 14581153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 30743499 - 30743589
Alignment:
Q  88 gtggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgtaacgacgattagaaaatccttgaatccc 178  Q
    ||||||| |||||||||||| | || | |||||| |||||| |||   ||||||||||||  ||||| ||||||| ||||| |||||||||    
T  30743499 gtggttgcaaggttttaattgtcctacccaatgcaagattaagttttgttgatttagaagtttaacggcgattaggaaatcattgaatccc 30743589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 23420571 - 23420699
Alignment:
Q  52 gaatttattagaagtaaataaaacagaaaagataaa-gtggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgt 150  Q
    ||||||||||||||  |||| ||   |||||||||| ||||||| | |||||||  | | |||| ||||||   ||||||||||||||||| ||| ||||    
T  23420571 gaatttattagaagcgaatagaatgaaaaagataaaagtggttgcatggttttacatgtcctgcccaatgcactattaggttggtttgattcagatgcgt 23420670  T
Q  151 aacgacgattagaaaatccttgaatcccc 179  Q
    ||| ||||| ||  |||||| ||||||||    
T  23420671 aacaacgataagggaatcctagaatcccc 23420699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 251
Target Start/End: Complemental strand, 22931085 - 22930887
Alignment:
Q  51 ggaatttattagaagtaaataaaacagaaaagat-aaagtggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcg 149  Q
    ||||| ||||| ||||||||| || |||||| || ||||| |||| |  ||||||||| || ||| |||| ||||||| || |||||||||| | | |||    
T  22931085 ggaatgtattaaaagtaaatagaatagaaaatatgaaagtagttgcattgttttaattgttttgcccaatacgagattcgggtggtttgattcaaatgcg 22930986  T
Q  150 taacgacgattagaaaatccttgaatcccccattttgtctttgctcggattaaagatgttagttattagtttatgacgtgtcttttgatttaagaaagta 249  Q
    ||||| ||||||| |||| ||| |||||||  ||| ||||||| | | ||||| |  ||||| | |||||| ||||| |||||||||||||| |||||||    
T  22930985 taacggcgattaggaaattcttcaatcccc--tttcgtctttgtttgaattaatgcagttagctgttagtt-atgacttgtcttttgatttacgaaagta 22930889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 30791518 - 30791479
Alignment:
Q  212 ttattagtttatgacgtgtcttttgatttaagaaagtaga 251  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  30791518 ttattagtttatgacatgtcgtttgatttaagaaagtaga 30791479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 14207842 - 14207879
Alignment:
Q  214 attagtttatgacgtgtcttttgatttaagaaagtaga 251  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  14207842 attagtttatgacatgtctttcgatttaagaaagtaga 14207879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 13581946 - 13582038
Alignment:
Q  85 aaagtggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgtaacgacgattagaaaatccttgaatcc 177  Q
    |||||||||| ||||||| |||| | || | |||||||||||||||||  | ||||| ||||| ||||||||| ||||| |||||||||||||    
T  13581946 aaagtggttgcaaggtttcaattgtcctacccaatgcgagattaggttattgtgattcagaagtgtaacgacgtttagagaatccttgaatcc 13582038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 8541800 - 8541721
Alignment:
Q  100 ttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgtaacgacgattagaaaatccttgaatcccc 179  Q
    ||||||||||||||| |||||||||||||||||| | ||||| | |||  |||||| ||||||  ||||| |||||||||    
T  8541800 ttttaattattctgcccaatgcgagattaggttgttgtgattgaaaagtataacgaagattagggaatccatgaatcccc 8541721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 24926750 - 24926873
Alignment:
Q  56 ttattagaagtaaata-aaacagaaaagat-aaagtggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgtaac 153  Q
    ||||| |||||||||| ||| |||||| || |||||||||| | |||||||||| | |||| |||| | ||||||||||||| ||||| ||| | ||||     
T  24926750 ttatttgaagtaaatagaaatagaaaacatgaaagtggttgcagggttttaattgtcctgcccaatacaagattaggttggtgtgattcagatgtgtaat 24926849  T
Q  154 gacgattagaaaatccttgaatcc 177  Q
    | |||||||  |||||||||||||    
T  24926850 ggcgattagggaatccttgaatcc 24926873  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 35134691 - 35134726
Alignment:
Q  214 attagtttatgacgtgtcttttgatttaagaaagta 249  Q
    ||||||||||||| ||||||||||||||||||||||    
T  35134691 attagtttatgacatgtcttttgatttaagaaagta 35134726  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 26419955 - 26419870
Alignment:
Q  50 cggaatttattagaagtaaata-aaacagaaaagat-aaagtggttgtaaggttttaattattctgcacaatgcgagattaggttg 133  Q
    |||||||||||||||||||||| ||| ||||||||| || |||||||||  ||||||||| |||  | ||||||||||||| ||||    
T  26419955 cggaatttattagaagtaaatagaaatagaaaagatgaacgtggttgtagtgttttaattgttcgacccaatgcgagattatgttg 26419870  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 11476037 - 11475955
Alignment:
Q  51 ggaatttattagaa-gtaaataaaacagaaaagataaagtggttgtaaggttttaattattctgcacaatgcgagattaggtt 132  Q
    |||||||||||||| |||||||||||| || |   ||||||||||||||||||||||  | |||| |||||| | ||||||||    
T  11476037 ggaatttattagaaagtaaataaaacaaaagattaaaagtggttgtaaggttttaatagtcctgcccaatgcaatattaggtt 11475955  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 8713956 - 8714036
Alignment:
Q  98 ggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgtaacgacgattagaaaatccttgaatccc 178  Q
    ||||| |||| | |||| |||||| |||||||||| | |||||| |||||  |||| ||||||||  ||||||||||||||    
T  8713956 ggtttaaattgtcctgcccaatgcaagattaggtttggttgattcagaagattaacaacgattagggaatccttgaatccc 8714036  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 9065843 - 9065923
Alignment:
Q  98 ggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgtaacgacgattagaaaatccttgaatccc 178  Q
    ||||| |||| | |||| |||||| |||||||||| | |||||| |||||  |||| ||||||||  ||||||||||||||    
T  9065843 ggtttaaattgtcctgcccaatgcaagattaggtttggttgattcagaagattaacaacgattagggaatccttgaatccc 9065923  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 178
Target Start/End: Complemental strand, 16440544 - 16440417
Alignment:
Q  50 cggaatttattagaagtaaataaaacagaaaagataaagtggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcg 149  Q
    |||||||||||| |||||||||||| | || ||||||| |||||| ||| ||||| || |  ||  ||||| |||||||||| ||||||||| |||   |    
T  16440544 cggaatttattataagtaaataaaataaaagagataaactggttgcaagttttta-ttgtcttgtccaatgtgagattaggtaggtttgattcagatttg 16440446  T
Q  150 taacgacgattagaaaatccttgaatccc 178  Q
    ||||||| |||||   |||||||||||||    
T  16440445 taacgacaattagggtatccttgaatccc 16440417  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 17859081 - 17859163
Alignment:
Q  96 aaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgtaacgacgattagaaaatccttgaatccc 178  Q
    |||| |||||||  ||||| |||||| |||||||||| || ||||| ||| | ||||||| ||||||  ||||||||||||||    
T  17859081 aagggtttaattgctctgcccaatgcaagattaggtttgtgtgattcagatgtgtaacgatgattagggaatccttgaatccc 17859163  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 22263508 - 22263444
Alignment:
Q  117 aatgcgagattaggttg-gtttgatttagaagcgtaacgacgattagaaaatccttgaatccccc 180  Q
    ||||||||||||||||  || | ||||||| | |||||  |||||||||||||||||||||||||    
T  22263508 aatgcgagattaggttttgtgttatttagatgtgtaacatcgattagaaaatccttgaatccccc 22263444  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 22557936 - 22558028
Alignment:
Q  51 ggaatttattagaagtaaataaaacagaaa-agataaagtggttgtaaggtttt-aattattctgcacaatgcgagattaggttggtttgatt 141  Q
    |||||||||| |||||||| ||||   ||| |||||||||||||| ||| |||| |||| |  |||||||||||||||||| ||||| |||||    
T  22557936 ggaatttatttgaagtaaaaaaaaataaaagagataaagtggttgcaagttttttaattgtcgtgcacaatgcgagattagattggtctgatt 22558028  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 19593163 - 19593107
Alignment:
Q  127 taggttggtttgatttagaagcgtaacgacgattagaaaatccttgaatcccccatt 183  Q
    ||||||||||||||| ||| | ||||| |||||||| |||| |||||||||||||||    
T  19593163 taggttggtttgattcagatgtgtaacaacgattaggaaattcttgaatcccccatt 19593107  T

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Target: scaffold0804 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 973 - 870
Alignment:
Q  89 tggttgtaaggttttaattattctgcacaatgcgagattaggttggtttgatttagaagcgtaacgacgattagaaaatccttgaatcccccattttgtc 188  Q
    |||||| | ||||||||||||  ||||||||||||| ||||||| | |||||| |||    ||||  |||||||  ||||||||||||||||| || |||    
T  973 tggttgcagggttttaattatcttgcacaatgcgaggttaggtttgattgattcagatatttaactgcgattagggaatccttgaatcccccacttcgtc 874  T
Q  189 tttg 192  Q
    ||||    
T  873 tttg 870  T

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Target: scaffold0280 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 17271 - 17223
Alignment:
Q  212 ttattagtttatgacgtgtcttttgatttaagaaagtagactatgaccc 260  Q
    |||||||| |||||  ||||||| |||||||||||||||| ||||||||    
T  17271 ttattagtgtatgaattgtctttagatttaagaaagtagaatatgaccc 17223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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