View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_low_12 (Length: 261)
Name: NF2853_low_12
Description: NF2853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 42007470 - 42007325
Alignment:
| Q |
1 |
aatattgtatcactatcattagtggctttgaaatataaaaaccattggtaattaccgtgatcttcgaaaattcaaatattccaaaacctaaaagtcttat |
100 |
Q |
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| T |
42007470 |
aatattgtatcactatcattagtggctttgaaatataaaaaccattggtaattaccgtgatcttcgaaaattcaaatattccaaaacctaaaagtcttat |
42007371 |
T |
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| Q |
101 |
cacaacaaaatacaagaaagtttcaacatttgaatgaattggcaat |
146 |
Q |
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| T |
42007370 |
cacaacaaaatacaagaaagtttcaacatttgaatgaattggcaat |
42007325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 42007292 - 42007226
Alignment:
| Q |
179 |
ggaccttcaagggcttggaagtggtaaagatgaatgatgaaaattttgaggagattagagaattaat |
245 |
Q |
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| T |
42007292 |
ggaccttcaagggcttggaagtggtaaagatgaatgatgaaaattttgaggagattagagaattaat |
42007226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 1242817 - 1242674
Alignment:
| Q |
3 |
tattgtatcactatcattagtggctttgaaatataaaaaccattggtaattaccgtgatcttcgaaaattcaaatattccaaaacctaaaagtcttatca |
102 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1242817 |
tattttatcactatcattagtggctttgaaatataaaaaccattggtaattaccgtgatcttcgaaaattcaaatatttcaaaacctaaaagtcttatca |
1242718 |
T |
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| Q |
103 |
caacaaaatacaagaaagtttcaacatttgaatgaattggcaat |
146 |
Q |
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| T |
1242717 |
caacaaaatacaagaaagtttcaacatttgaatgaattggcaat |
1242674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 1242641 - 1242575
Alignment:
| Q |
179 |
ggaccttcaagggcttggaagtggtaaagatgaatgatgaaaattttgaggagattagagaattaat |
245 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1242641 |
ggacctttaagggcttggaagtggtaaagatgaatgatgaaaattttgaggagattagagaattaat |
1242575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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