View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2853_low_18 (Length: 227)
Name: NF2853_low_18
Description: NF2853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 42759799 - 42759991
Alignment:
| Q |
15 |
acagatggatagatgtgttggttttcaaaacgaaagttcaatagccattaattaatgttgtgctctattcaagcaaggggaattttgaaatacaaataca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42759799 |
acagatggatagatgtgttggttttcaaaacgaaagttcaataacccttaactaatgttgtgctctattcaagcaaggggaatttcgaaatacaaataca |
42759898 |
T |
|
| Q |
115 |
aactaaatgaaaaactaaaggtttacataaaacacggtaaactaagcagaccacaataattgcattattttgaattcaaacagccaaatactt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42759899 |
aactaaatgaaaaactaaaggtttacataaaacaaggtaaactaagcagaccacaataattgcattattttgaattcaaacagccaaatactt |
42759991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 1402045 - 1401857
Alignment:
| Q |
19 |
atggatagatgtgttggttttcaaaacgaaagttcaatagccattaattaatgttgtgctctattcaagcaaggggaattttgaaatacaaatacaaact |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1402045 |
atggatagatgtgttggttttcaaaacgaaagttcaatagcccttgattaatgttgtgttgtattcaagcaaggggaattttgaaatacaaatacaaact |
1401946 |
T |
|
| Q |
119 |
aaatgaaaaactaaaggtttacataaaacacggtaaactaagcagaccacaataattgcattattttgaattcaaacagccaaatactt |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1401945 |
aaatggaaaactaaaggtttacataaaacacggtaaactaagcagaccacaataattgcattattttgaattcaaacagtcaaatactt |
1401857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University