View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_low_20 (Length: 211)
Name: NF2853_low_20
Description: NF2853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 1459496 - 1459690
Alignment:
| Q |
1 |
gtttcaaaaaattgacaatattaattttcaatggcatgcatcatatcatgatatataccttggatagttttatgtgtagaaactccacatttaaaagtgc |
100 |
Q |
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| T |
1459496 |
gtttcaaaaaattgacaatattaattttcaatggcatgcatcatatcatgatatataccttggatagttttatgtgtagaaactccacatttgaaagtgc |
1459595 |
T |
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| Q |
101 |
ttccatcggaaccccgcaatcacattgaataatatctgctctattcaactttgttaaggttttgcggcatgcgttggaaaagacaagagagacat |
195 |
Q |
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| T |
1459596 |
tttcatccgaaccccgcaatcacattgaataatatctgctctattcaactttgttaaggttttgcggcatgcgttggaaaagagaagagagacat |
1459690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 1446151 - 1446254
Alignment:
| Q |
59 |
cttggatagttttatgtgtagaaactccacatttaaaagtgcttccatcggaaccccgcaatcacattgaataatatctgctctattcaactttgttaag |
158 |
Q |
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| T |
1446151 |
cttgtatagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatctgctctaatcaactttgttaag |
1446250 |
T |
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| Q |
159 |
gttt |
162 |
Q |
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|||| |
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| T |
1446251 |
gttt |
1446254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 12105028 - 12104995
Alignment:
| Q |
129 |
ataatatctgctctattcaactttgttaaggttt |
162 |
Q |
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| T |
12105028 |
ataatatctgctcttttcaactttgttaaggttt |
12104995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 157
Target Start/End: Original strand, 974962 - 975064
Alignment:
| Q |
55 |
ataccttggatagttttatgtgtagaaactccacatttaaaagtgcttccatcggaaccccgcaatcacattgaataatatctgctctattcaactttgt |
154 |
Q |
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|||||| ||||||||||||| |||||||||||| |||| |||||| || || ||||| ||| ||||| | | ||||||||||||| ||||| ||| | |
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| T |
974962 |
atacctcggatagttttatgcgtagaaactccaaatttgaaagtgatttcaccggaaaatagcattcacagtcagtaatatctgctctgttcaatttttt |
975061 |
T |
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| Q |
155 |
taa |
157 |
Q |
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||| |
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| T |
975062 |
taa |
975064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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