View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_low_3 (Length: 485)
Name: NF2853_low_3
Description: NF2853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_low_3 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 15 - 473
Target Start/End: Complemental strand, 47473612 - 47473151
Alignment:
| Q |
15 |
tcactgctgtacaaatagagtggtctctttggactcgcgacattgaggaggagatagttcctctctgcaggttagtttgagttcctctccaagttcattg |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473612 |
tcactgctgtacaaatagagtggtctctttggactcgcgacattgaggaggagatagttcctctctgcaggttagtttgagttcctctccaagttcattg |
47473513 |
T |
|
| Q |
115 |
gttaagtgttacttgaaaagagggttaaggaaaaggaaccatttgctcctggttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttg |
214 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473512 |
gttaagtgttacttgaaaagagggttaaggaataggaaccatttgctcctggttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttg |
47473413 |
T |
|
| Q |
215 |
atacagagagcttggtattggaattgtaccatatagtcctcttggtcgtggtttctttggtggcaaaggggttacggaaaatgtgcctgctgttagctcc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473412 |
atacagagagcttggtattggaattgtaccatatagtcctcttggtcgtggtttctttggtggcaaaggggttacggaaaatgtgcctgctgttagctcc |
47473313 |
T |
|
| Q |
315 |
ctggta---tagcatttcagaacttaaattatatgtctgtttccgttgctttccatggaatggaactattactaagacatgctaatttatgtaattgatc |
411 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47473312 |
ctggtatagtagcatttcagaacttaaattatatgtctgtttccgttgctttccatggaattgaactattactaagacatgctaatttatgtaattgatc |
47473213 |
T |
|
| Q |
412 |
aaatcttaatcatgtattaaatattggttggtttgttgtcttattttgtaaacaaacaaatg |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473212 |
aaatcttaatcatgtattaaatattggttggtttgttgtcttattttgtaaacaaacaaatg |
47473151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 47486327 - 47485994
Alignment:
| Q |
15 |
tcactgctgtacaaatagagtggtctctttggactcgcgacattgaggaggagatagttcctctctgcaggttagtttgagttcctctccaagttcattg |
114 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| || ||| ||||||||||||||||| ||||||||| ||| |
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| T |
47486327 |
tcacagctgtacaaatggagtggtctctttggactcgtgacattgaggatgagatagttccactatgccggttagtttgagttcctgtccaagttctttg |
47486228 |
T |
|
| Q |
115 |
gttaagtgttacttgaaaagagggttaaggaaaaggaaccatttgctcctggttgcttgtttgtgttaaatgtg-----acttcactaatttaaagcttt |
209 |
Q |
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|||||| ||||||||||||||||||| |||| |||| ||||||| | ||| |||||||||||||||| |||||||| |||||||||||| |
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| T |
47486227 |
attaagt--tacttgaaaagagggttaaagaaatagaactgtttgctctt--ttggatgtttgtgttaaatgttgtactacttcacttatttaaagcttt |
47486132 |
T |
|
| Q |
210 |
tgttgatacagagagcttggtattggaattgtaccatatagtcctcttggtcgtggtttctttggtggcaaaggggttacggaaaatgtgcctgctgtta |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |||| |
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| T |
47486131 |
tgttgatacagagagcttggtattggaattgtaacatatagtcctcttggtcgtggtttctttggtggcaaaggagttacggaaaatgtttcagcagtta |
47486032 |
T |
|
| Q |
310 |
gctccctggtatagcatttcagaacttaaattatatgt |
347 |
Q |
| |
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||||||||||| ||||||| || ||||||||||||||| |
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| T |
47486031 |
gctccctggtaaagcattttagcacttaaattatatgt |
47485994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 167 - 473
Target Start/End: Complemental strand, 47476703 - 47476405
Alignment:
| Q |
167 |
ttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttgatacagagagcttggtattggaattgtaccatatagtcctcttggtcgtggt |
266 |
Q |
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|||| |||||||||||| || || || ||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
47476703 |
ttgcatgtttgtgttaa-tgagattttacttatttcaagcttttgttgatatagagagcttggtattggaattgtaccatatagtccacttggtaaaggt |
47476605 |
T |
|
| Q |
267 |
ttctttggtggcaaaggggttacggaaaatgtgcctgctgttagctccctggtatagcatttcagaacttaaattatatgtctgtttccgttgctttcca |
366 |
Q |
| |
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|| |||| ||||||||| |||| ||| ||||||| |||| | ||||||||||||| || | || |||| | || |||||| |||||| ||| |
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| T |
47476604 |
ttttttgctggcaaaggagttatcgaagatgtgcc------gagcttcatggtatagcattttagtagttgaattgaaagtgtgtttctcttgcttgcca |
47476511 |
T |
|
| Q |
367 |
tggaatggaactattactaagacatgctaatttatgta-----attgatcaaatcttaatcatgtattaaatattggttggtttgttgtcttattttgta |
461 |
Q |
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| |||| || || |||||||||| || ||||| | ||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| |
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| T |
47476510 |
tagaat-----tactattaagacatgccaa-ttatgcaatagcattgatcaaatcttaatcatgaattaaatattgattgctttgttgtcttattttgta |
47476417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 47476910 - 47476814
Alignment:
| Q |
15 |
tcactgctgtacaaatagagtggtctctttggactcgcgacattgaggaggagatagttcctctctgcaggttagtttgagttcctctccaagttca |
111 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47476910 |
tcacagctttacaaatagagtggtctctctggactcgcgacattgagaacgagatagttcctctctgcaggttagtttgagttcctctccaagttca |
47476814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 405 - 473
Target Start/End: Complemental strand, 24802576 - 24802508
Alignment:
| Q |
405 |
attgatcaaatcttaatcatgtattaaatattggttggtttgttgtcttattttgtaaacaaacaaatg |
473 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
24802576 |
attgatcaaatcttaatcatgaattaaatattgattgctttgttgtcttattttgtaaacaaacaaatg |
24802508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 405 - 463
Target Start/End: Complemental strand, 47485966 - 47485908
Alignment:
| Q |
405 |
attgatcaaatcttaatcatgtattaaatattggttggtttgttgtcttattttgtaaa |
463 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| | ||||| | ||||||||||| |
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| T |
47485966 |
attgatcaaatcttaatcatgaattaaatattggttgctctgttggcgtattttgtaaa |
47485908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 17386566 - 17386521
Alignment:
| Q |
183 |
aatgtgacttcactaatttaaagcttttgttgatacagagagcttg |
228 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
17386566 |
aatgtgacttcactgatttaaagtttttgttgatacagagagcttg |
17386521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 44903806 - 44903750
Alignment:
| Q |
167 |
ttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttgatacagaga |
223 |
Q |
| |
|
|||| |||||||||| |||||||||| |||||||||||| |||||||||| |||||| |
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|
| T |
44903806 |
ttgcatgtttgtgttgaatgtgactttactaatttaaagtttttgttgatgcagaga |
44903750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 49091666 - 49091605
Alignment:
| Q |
167 |
ttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttgatacagagagcttg |
228 |
Q |
| |
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|||| |||||||||| ||||||| || |||||||||||| |||||||||| |||||| |||| |
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| T |
49091666 |
ttgcatgtttgtgttgaatgtgaatttactaatttaaagtttttgttgatgcagagaacttg |
49091605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 17225969 - 17226006
Alignment:
| Q |
246 |
tatagtcctcttggtcgtggtttctttggtggcaaagg |
283 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
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| T |
17225969 |
tatagtcctcttggtcgtggtttttttggtggcaaagg |
17226006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 17225908 - 17225952
Alignment:
| Q |
167 |
ttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttg |
211 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||||||||||||| |
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| T |
17225908 |
ttgcgtgtttgtgttgaatgtggtttcactaatttaaagcttttg |
17225952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 143973 - 143936
Alignment:
| Q |
246 |
tatagtcctcttggtcgtggtttctttggtggcaaagg |
283 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||| |
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| T |
143973 |
tatagtcctcttcgtcgtggtttttttggtggcaaagg |
143936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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