View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2853_low_9 (Length: 281)
Name: NF2853_low_9
Description: NF2853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2853_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 32244531 - 32244282
Alignment:
| Q |
12 |
aagaagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgat |
111 |
Q |
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| T |
32244531 |
aagaagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgat |
32244432 |
T |
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| Q |
112 |
tccatatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32244431 |
tccatatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacat--atatcttaatgtgatgtgtaggaaattaagaattcataggcatgc |
32244334 |
T |
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| Q |
212 |
atgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttc |
264 |
Q |
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| T |
32244333 |
atggtgaagaatgtcatgaact-agcaacctacactgtgtgacgtgtcccttc |
32244282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 32250240 - 32249992
Alignment:
| Q |
12 |
aagaagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
32250240 |
aagaagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatatatttgttctcattcatttaactgcagtcaggat |
32250141 |
T |
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| Q |
112 |
tccatatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgc |
211 |
Q |
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| T |
32250140 |
tccatatgtgaagatagcaacaaatataccctctgtgatgtctc--tgcacatatctatcataatgtgatgtgtaggaaattaagaattcataggcatgc |
32250043 |
T |
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| Q |
212 |
atgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtccctt |
263 |
Q |
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| T |
32250042 |
atggtgaagaatgtcatgaact-agcaacctacactgtgtgacgtgtccctt |
32249992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 32254912 - 32254812
Alignment:
| Q |
163 |
atatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtccct |
262 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32254912 |
atatatataataatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtcatgaacttagcaacctacactgtgtgacgtgtccct |
32254813 |
T |
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| Q |
263 |
t |
263 |
Q |
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| T |
32254812 |
t |
32254812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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