View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2854_high_1 (Length: 416)
Name: NF2854_high_1
Description: NF2854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2854_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 4301929 - 4301530
Alignment:
| Q |
1 |
tcatcagttacaaatttcaagggttgtgttttatcaattcctcttttctcaaatacaatcccaagtgcaataccatatcttcgaggccaatcaataacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301929 |
tcatcagttacaaatttcaagggttgtgttttatcaattcctcttttctcaaatacaatcccaagtgcaataccatatcttcgaggccaatcaataacta |
4301830 |
T |
|
| Q |
101 |
cttcactattttcaaataaataccaatgaagagacttatcgcaaataaattcatatatgataatatttttattttctttgcaacagtaccccaacaacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301829 |
cttcactattttcaaataaataccaatgaagagacttatcgcaaataaattcatatatgataatatttttattttctttgcaacagtaccccaacaacat |
4301730 |
T |
|
| Q |
201 |
cactatattcttgtatctagcaaaactcaagacatacacttcagaattggcttcatcaatgtcttcagaatcatctttcttggaatttgacttatgttcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301729 |
cactatattcttgtatctagcaaaactcaagacatacacttcagaattggcttcatcaatgtcttcagaatcatctttcttggaatttgacttatgttcc |
4301630 |
T |
|
| Q |
301 |
tttcgtgaaacataaccattggtggctttgattgatttctcaactgatgatgcaatgaatggtctccaaactaatttaaccatgaaacacacccgttttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301629 |
tttcgtgaaacataaccattggtggctttgattgatttctcaactgatgatgcaatgaatggtctccaaactaatttaaccatgaaacacacccgttttg |
4301530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 113 - 247
Target Start/End: Complemental strand, 40668227 - 40668093
Alignment:
| Q |
113 |
caaataaataccaatgaagagacttatcgcaaataaattcatatatgataatatttttattttctttgcaacagtaccccaacaacatcactatattctt |
212 |
Q |
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||||||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
40668227 |
caaataaatgccaatgaagagacttattgcaaatatattcatatatgagaatatttttattttctttgcaacaataccccaacagcatcactatattctt |
40668128 |
T |
|
| Q |
213 |
gtatctagcaaaactcaagacatacacttcagaat |
247 |
Q |
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|| ||||||||||||||||||||| || ||||||| |
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| T |
40668127 |
gtgtctagcaaaactcaagacataaacctcagaat |
40668093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 239 - 362
Target Start/End: Original strand, 33959044 - 33959167
Alignment:
| Q |
239 |
cttcagaattggcttcatcaatgtcttcagaatcatctttcttggaatttgacttatgttcctttcgtgaaacataaccattggtggctttgattgattt |
338 |
Q |
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||||||| ||||||||||| ||||||||||||||||||| ||| | |||||||||||| |||||||||||||||||||||||| | |||||||||||||| |
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| T |
33959044 |
cttcagacttggcttcatctatgtcttcagaatcatcttgctttgtatttgacttatgctcctttcgtgaaacataaccattgtttgctttgattgattt |
33959143 |
T |
|
| Q |
339 |
ctcaactgatgatgcaatgaatgg |
362 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
33959144 |
ctcaactgatgatgcaatgaatgg |
33959167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 40668369 - 40668312
Alignment:
| Q |
56 |
caatcccaagtgcaataccatatcttcgaggccaatcaataactacttcactattttc |
113 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||||||| |||| ||||||||||||| |
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| T |
40668369 |
caatcccaagtgcaataccatatctttgagaccaatcaagaactgcttcactattttc |
40668312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 5085421 - 5085365
Alignment:
| Q |
1 |
tcatcagttacaaatttcaagggttgtgttttatcaattcctcttttctcaaataca |
57 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
5085421 |
tcatcagttacaaatttcaagggttgtgtttcatcaattcctcttttctcgaataca |
5085365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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