View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2854_low_4 (Length: 250)
Name: NF2854_low_4
Description: NF2854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2854_low_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 29719352 - 29719110
Alignment:
| Q |
8 |
aaacaaaggctaaaacaaagaagcgaaactaacataaaactatggaattaatacaaaaagaaaaggggacacttcaaagttcagaagagaaccttgatca |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29719352 |
aaacaaaggctaaaacaaagaagcgaaactaacataaaactatggaattaatacaaaaagaaaaggggacacttcaaagttcaaaagagaaccttgatca |
29719253 |
T |
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| Q |
108 |
tacatgaaaattaaagaaagcatagtgaaagtggaaaatggtgccgtgtgctcatcaagttccacgtgtcccaggccttgtagtgaacataatatcctga |
207 |
Q |
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| T |
29719252 |
tacatgaaaattaaagaaagcatagtgaaagtggaaaatggtgccgtgtgctcatcaagttccacgtgtcccaggccttgtagtgaacataatatcctga |
29719153 |
T |
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| Q |
208 |
agtcttgggaacttagtacctttggttttgttattggcatcac |
250 |
Q |
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| T |
29719152 |
agtcttgggaacttagtacctttggttttgttattggcatcac |
29719110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 29690638 - 29690406
Alignment:
| Q |
8 |
aaacaaaggctaaaacaaagaagcgaaactaacataaaactatggaattaatacaaaaagaaaaggggacacttcaaagttcagaagagaaccttgatca |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
29690638 |
aaacaaaggctaaaacaaagaagcgaaactaacataaaactatggaattaatacaaaaagaaaaggggacacttcaaagttcaaaa-----ccttgatca |
29690544 |
T |
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| Q |
108 |
tacatgaaaattaaagaaagcatagtgaaagtggaaaatggtgccgtgtgctcatcaagttccacgtgtcccaggccttgtagtgaacataatatcctga |
207 |
Q |
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| T |
29690543 |
tacatgaaaattaa-----gaacagtgaaggtggaaaattgtgtggtgtgctcatcaagttccacgtgtcccaggccttgtagtgaacataatatcctga |
29690449 |
T |
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| Q |
208 |
agtcttgggaacttagtacctttggttttgttattggcatcac |
250 |
Q |
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| T |
29690448 |
agtcttgggaacttagtacctttggttttgttattggcatcac |
29690406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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