View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2854_low_5 (Length: 237)
Name: NF2854_low_5
Description: NF2854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2854_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 4171108 - 4171000
Alignment:
| Q |
117 |
tgattgaaatttcttataaattacttaaatgcaatgttgcaagttgaatgaacacacacaaaataataattaaaccaaccaaaattagtccttccttcca |
216 |
Q |
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| T |
4171108 |
tgattgaaatttcttataaattacttaaatgcaatgttgcaagttgaatgaacacacacaaaataataattaaaccaaccaaaattagtccttccttcca |
4171009 |
T |
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| Q |
217 |
ttggagtat |
225 |
Q |
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||||||||| |
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| T |
4171008 |
ttggagtat |
4171000 |
T |
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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 4171216 - 4171183
Alignment:
| Q |
17 |
aatatgaacaactccatttttgacctcttcaaat |
50 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4171216 |
aatatgaacaactccatttttgacctcttcaaat |
4171183 |
T |
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