View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2855_low_1 (Length: 1059)
Name: NF2855_low_1
Description: NF2855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2855_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-145; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 191 - 487
Target Start/End: Complemental strand, 5581498 - 5581204
Alignment:
| Q |
191 |
gtataatgtttatggagagatcttgatatgatttcttcacatttatggttccatatttcatggcctccttgtgatgattttgttttcattttctacttta |
290 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5581498 |
gtataatgtttatggagagatcttggtatgatttcttcacatttatggttccatatttcatggcctccttgtgatgattttgtttgcattttctacttta |
5581399 |
T |
|
| Q |
291 |
gtttttcaaatttggatattgtgttctggatcacggttttaaattgcggttgcggttacaccacactcctttacattagggtaaaatgcagacaaatgtg |
390 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5581398 |
gttttttaaatttggata--gtgttctggatcacggttttaaattgcggttgcggttacactacactcctttacattagggtaaaatgcggacaaatgtg |
5581301 |
T |
|
| Q |
391 |
gccgcatatgcggttgccatcggcaattcggaataataattgtataattgtattggttctattatgcatgtattagatccttgtttgtttaatttac |
487 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5581300 |
gccgcatatgcggttgcgatcggcaattcggaataataattgtataattgtattggttctattatgcatgtattagatccttgtttgtttaatttac |
5581204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 517 - 762
Target Start/End: Complemental strand, 5581177 - 5580932
Alignment:
| Q |
517 |
aatcttcttcgaggaaacattttggtattctataacattagatttggaagtttttaagcattgttttcaataacattttgattgaaggagtgatcggtgt |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5581177 |
aatcttcttcgaggaaacattttggtattctataacattagatttggaagtttttaagcattgttttcaataacattttgattgaaggagtgatcggtgt |
5581078 |
T |
|
| Q |
617 |
ctgacacaccgacacatgtaattacattcaatcacttttattttctttaaattattatcgatgtcacgtatctgatgtctgtattagtgattcatagttt |
716 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5581077 |
ctgacacatcgacacatgtaattacattcaatcacttttattttctttaaattattatcgatgtcacgtatctggtgtctgtattagtgattcatagttt |
5580978 |
T |
|
| Q |
717 |
ttgagactagtgatctaaattaaataatgtacattcaaccatagaa |
762 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
5580977 |
ttgagactagtaatctaaataaaataatgtacattcaaccatagaa |
5580932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 828 - 1049
Target Start/End: Complemental strand, 5580866 - 5580645
Alignment:
| Q |
828 |
gtgtgccttaggttgccaatgatccatctggaaaacaaatcaatgcacttgagcagcacattaagaaccttttgtgtccttcaactccattgtttttcaa |
927 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5580866 |
gtgtgccttaggttgccaatgatccatctggaaaacaaatcaatgcacttgagcagcacattaagaaccttttgtgtccatcaactccattgtttttcaa |
5580767 |
T |
|
| Q |
928 |
taccctttatgatccttttagagaaggtgctgattttgttcgtggatacccttttagtcttcgtgaaggtgtcccaacagctatttctcatggactttgg |
1027 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5580766 |
taccctttatgatccttttagagaaggtgctgattttgttcgtggatacccttttagtcttcgtgaaggtgtcccaacagctatttctcatggactttgg |
5580667 |
T |
|
| Q |
1028 |
ctcaacatcccagatgatgatg |
1049 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
5580666 |
ctcaacatcccagattatgatg |
5580645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 5581666 - 5581555
Alignment:
| Q |
18 |
cttcttgcatttcattcaaggactctgcatgtcgttgctttggttacatggtttctaagaagaagtacatcttcactattgatgatgattgctttgtaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5581666 |
cttcttgcatttcattcaaggactctgcatgtcgttgctttggttacatggtttctaagaagaagtacatcttcactattgatgatgattgctttgtaag |
5581567 |
T |
|
| Q |
118 |
tttttcaatcac |
129 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5581566 |
tttttcaatcac |
5581555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 622 - 660
Target Start/End: Complemental strand, 4005183 - 4005145
Alignment:
| Q |
622 |
acaccgacacatgtaattacattcaatcacttttatttt |
660 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
4005183 |
acactgacacatgtaattacattcaatcacttctatttt |
4005145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 622 - 676
Target Start/End: Original strand, 32931492 - 32931545
Alignment:
| Q |
622 |
acaccgacacatgtaattacattcaatcacttttattttctttaaattattatcg |
676 |
Q |
| |
|
||||||||||||||| ||| ||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
32931492 |
acaccgacacatgtagttatatttaatcacttctattttc-ttaaattattatcg |
32931545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 622 - 663
Target Start/End: Original strand, 1960330 - 1960371
Alignment:
| Q |
622 |
acaccgacacatgtaattacattcaatcacttttattttctt |
663 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
1960330 |
acaccggcacatgaaattacattcaatcactttcattttctt |
1960371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 8e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 837 - 1049
Target Start/End: Complemental strand, 25634116 - 25633904
Alignment:
| Q |
837 |
aggttgccaatgatccatctggaaaacaaatcaatgcacttgagcagcacattaagaaccttttgtgtccttcaactccattgtttttcaatacccttta |
936 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||| ||||||| ||||||||||||||||| | || ||| ||||| ||||| || ||||| || || || |
|
|
| T |
25634116 |
aggttgccaaagatccatctggcaaagaaattgatgcactgcagcagcacattaagaacttgctgactccatcaaccccatttttcttcaacactctata |
25634017 |
T |
|
| Q |
937 |
tgatccttttagagaaggtgctgattttgttcgtggatacccttttagtcttcgtgaaggtgtcccaacagctatttctcatggactttggctcaacatc |
1036 |
Q |
| |
|
||| || | |||||||||||| ||||||||||| || || || || |||||||| || ||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
25634016 |
tgacccatatagagaaggtgcagattttgttcgcggctatccgttcagtcttcgagagggtgtcccaactgctatttctcatggcctttggctcaacatt |
25633917 |
T |
|
| Q |
1037 |
ccagatgatgatg |
1049 |
Q |
| |
|
|| ||| |||||| |
|
|
| T |
25633916 |
cctgattatgatg |
25633904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 25635916 - 25635819
Alignment:
| Q |
18 |
cttcttgcatttcattcaaggactctgcatgtcgttgctttggttacatggtttctaagaagaagtacatcttcactattgatgatgattgctttgta |
115 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||| ||| ||||| ||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
25635916 |
cttcttgcatttcattcaaagactctgcttgtcgttgctttggtttcattgtttcaaagaagaagtatatctttactattgatgatgattgctttgta |
25635819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 3e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 866 - 1049
Target Start/End: Original strand, 20178025 - 20178208
Alignment:
| Q |
866 |
atcaatgcacttgagcagcacattaagaaccttttgtgtccttcaactccattgtttttcaataccctttatgatccttttagagaaggtgctgattttg |
965 |
Q |
| |
|
||||||||||||||||||||||||||||| || | |||| || |||||||| || ||||| |||||||| ||||| | ||||| ||||| ||||| | |
|
|
| T |
20178025 |
atcaatgcacttgagcagcacattaagaatctcctcagtccatccactccatttttcttcaacaccctttacgatccatacagagacggtgccgatttcg |
20178124 |
T |
|
| Q |
966 |
ttcgtggatacccttttagtcttcgtgaaggtgtcccaacagctatttctcatggactttggctcaacatcccagatgatgatg |
1049 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||| || || ||||||| || |||||||||||||| || ||| |||||| |
|
|
| T |
20178125 |
tccgtggataccctttcagtcttcgtgaaggtgtccccactgccgtttctcacggtctttggctcaacatacctgattatgatg |
20178208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 20177038 - 20177141
Alignment:
| Q |
18 |
cttcttgcatttcattcaaggactctgcatgtcgttgctttggttacatggtttctaagaagaagtacatcttcactattgatgatgattgctttgtaag |
117 |
Q |
| |
|
||||||| || || || ||||| ||||| ||||||||||||||||| |||||||||||||||||||| || | || ||||||||||||||||||||||| |
|
|
| T |
20177038 |
cttcttgtatctcctttaaggattctgcttgtcgttgctttggttatatggtttctaagaagaagtatatttataccattgatgatgattgctttgtaag |
20177137 |
T |
|
| Q |
118 |
tttt |
121 |
Q |
| |
|
|||| |
|
|
| T |
20177138 |
tttt |
20177141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 628 - 673
Target Start/End: Original strand, 28735820 - 28735864
Alignment:
| Q |
628 |
acacatgtaattacattcaatcacttttattttctttaaattatta |
673 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
28735820 |
acacatataattacattcaatcacttctattttc-ttaaattatta |
28735864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 836 - 1038
Target Start/End: Complemental strand, 5018643 - 5018441
Alignment:
| Q |
836 |
taggttgccaatgatccatctggaaaacaaatcaatgcacttgagcagcacattaagaaccttttgtgtccttcaactccattgtttttcaatacccttt |
935 |
Q |
| |
|
||||||||||||||||| |||| ||| | |||||||||||||||||||| || ||||||||| | || || || || || || |||||||| || || | |
|
|
| T |
5018643 |
taggttgccaatgatcctactgggaaaaagatcaatgcacttgagcagcatatcaagaaccttctctgcccatccacacctttctttttcaacactctct |
5018544 |
T |
|
| Q |
936 |
atgatccttttagagaaggtgctgattttgttcgtggatacccttttagtcttcgtgaaggtgtcccaacagctatttctcatggactttggctcaacat |
1035 |
Q |
| |
|
|||| || | ||||||||||| ||||| |||||||| ||||| || ||||| ||||||||||| ||||| ||| ||||||| || ||||||||||| || |
|
|
| T |
5018543 |
atgaaccatacagagaaggtgcagatttcgttcgtggctaccccttcagtctccgtgaaggtgtaccaactgctgtttctcacggcctttggctcaatat |
5018444 |
T |
|
| Q |
1036 |
ccc |
1038 |
Q |
| |
|
||| |
|
|
| T |
5018443 |
ccc |
5018441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 5019972 - 5019879
Alignment:
| Q |
29 |
tcattcaaggactctgcatgtcgttgctttggttacatggtttctaagaagaagtacatcttcactattgatgatgattgctttgtaagttttt |
122 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| || |||||||||||||||||||| ||||||| |
|
|
| T |
5019972 |
tcattcaaggattctgcatgtcgttgctttggttatatggtttctaagaagaagtatatctataccattgatgatgattgctttgtgagttttt |
5019879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 626 - 681
Target Start/End: Complemental strand, 10440427 - 10440373
Alignment:
| Q |
626 |
cgacacatgtaattacattcaatcacttttattttctttaaattattatcgatgtc |
681 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10440427 |
cgacacatgtagtaacattcaatcacttttattttc-ttaaattattatcgatgtc |
10440373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 626 - 663
Target Start/End: Original strand, 41953171 - 41953208
Alignment:
| Q |
626 |
cgacacatgtaattacattcaatcacttttattttctt |
663 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
41953171 |
cgacacatgtgattacattcaatcactttcattttctt |
41953208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 622 - 662
Target Start/End: Original strand, 33331945 - 33331985
Alignment:
| Q |
622 |
acaccgacacatgtaattacattcaatcacttttattttct |
662 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33331945 |
acaccgacacatgtaattacatttaatcacttttattttct |
33331985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 622 - 675
Target Start/End: Original strand, 5401186 - 5401239
Alignment:
| Q |
622 |
acaccgacacatgtaattacattcaatcacttttattttctttaaattattatc |
675 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
5401186 |
acaccgacgcatgtagttacattcaatcacttcgattttttttaaattattatc |
5401239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 640 - 673
Target Start/End: Original strand, 2642911 - 2642944
Alignment:
| Q |
640 |
acattcaatcacttttattttctttaaattatta |
673 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
2642911 |
acattcaatcactttcattttctttaaattatta |
2642944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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