View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2855_low_4 (Length: 289)
Name: NF2855_low_4
Description: NF2855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2855_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 36313126 - 36313399
Alignment:
| Q |
1 |
tcagaacagatatcatattgccccaaaaagaagcacgatcattataataattgtcttcatggttataacgaactggcatgcgcaaatcattaatctgatc |
100 |
Q |
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| T |
36313126 |
tcagaacagatataatattgccccaaaaagaagcacgatcattataatagttgttttcatggttataacgaactggcatgtgcaaatcattaatctgatc |
36313225 |
T |
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| Q |
101 |
aatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcatttatcaataatggcgagcacaccaagt |
200 |
Q |
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| T |
36313226 |
aatgcagcttttctccaaaccttcattcaaataatgacaatcacgaatgtcaagagactcaagaagagggcatttatcaataatggcgagcacaccaagt |
36313325 |
T |
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| Q |
201 |
tcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgtttt |
274 |
Q |
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| T |
36313326 |
tcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgtttt |
36313399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 75 - 274
Target Start/End: Original strand, 36333266 - 36333466
Alignment:
| Q |
75 |
ggcatgcgcaaatcattaatctgatcaatgcagctttt-ctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcat |
173 |
Q |
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| T |
36333266 |
ggcattcgcatatcattgatttgatcaatgcacctttttctccaaatcttcattcaaataatgacaatcacgaatgtcaagagactcaagaagagggcct |
36333365 |
T |
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| Q |
174 |
ttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttt |
273 |
Q |
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| T |
36333366 |
ttatcaataatggcgagcacaccaagttgagtgagcttgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccattt |
36333465 |
T |
|
| Q |
274 |
t |
274 |
Q |
| |
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| T |
36333466 |
t |
36333466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 51 - 264
Target Start/End: Original strand, 36327418 - 36327631
Alignment:
| Q |
51 |
ttgtcttcatggttataacgaactggcatgcgcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgt |
150 |
Q |
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|||||||||||| |||||||| ||||| ||||||| || ||||| |||||||| ||||||| |||| |||| |||||||||||||||||| ||||| |
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| T |
36327418 |
ttgtcttcatggatataacgacttggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaatcttcagtcaaataatgacaatcactaatgt |
36327517 |
T |
|
| Q |
151 |
caagagattcaagaagagggcatttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgt |
250 |
Q |
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| T |
36327518 |
caagagactcaagaagagggcagctatcaataatggcaagcacaccaagttcagtgagctcgtgtcctttcaaatcaagatggcgtagaccaggcatcgt |
36327617 |
T |
|
| Q |
251 |
ttcagcaataacaa |
264 |
Q |
| |
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|||||||||||||| |
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| T |
36327618 |
ttcagcaataacaa |
36327631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 82 - 261
Target Start/End: Original strand, 36335978 - 36336157
Alignment:
| Q |
82 |
gcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcatttatcaat |
181 |
Q |
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||||||| || ||||| |||||||| ||||||| |||| ||||||||||| | ||||| || |||||||||| ||||||||||||||||||||||||| |
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| T |
36335978 |
gcaaatccttgatctggtcaatgcaccttttcttcaaatcttcattcaaattaagacaaaaactaatgtcaagatattcaagaagagggcatttatcaat |
36336077 |
T |
|
| Q |
182 |
aatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataa |
261 |
Q |
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| T |
36336078 |
aatggcgagcacgccaagttcagtgagcttgtgtcctctcatatcaagatggcatagaccaggcattgtttcagcaataa |
36336157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 82 - 274
Target Start/End: Original strand, 36320605 - 36320797
Alignment:
| Q |
82 |
gcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcatttatcaat |
181 |
Q |
| |
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||||||| || ||||| |||||||| |||||| |||| |||| |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |
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| T |
36320605 |
gcaaatccttgatctggtcaatgcaccttttcgtcaaatcttcactcaaataatgacaatcactaatgtcaagagattcaagaacaggacatttatcaat |
36320704 |
T |
|
| Q |
182 |
aatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgtttt |
274 |
Q |
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|||||| |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| ||| |||| |
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| T |
36320705 |
aatggcacgcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccatttt |
36320797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 136 - 264
Target Start/End: Original strand, 36325639 - 36325767
Alignment:
| Q |
136 |
gacaatcacgaatgtcaagagattcaagaagagggcatttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcg |
235 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
36325639 |
gacaaacactaatgtcaagagattcaagaagagggcatttatcaattatggcgagcacacgaagttcactgagcttgtgtcctttcatatcaagatggca |
36325738 |
T |
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| Q |
236 |
tagaccaggcattgtttcagcaataacaa |
264 |
Q |
| |
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|||||||||||| |||||||||||||||| |
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| T |
36325739 |
tagaccaggcatcgtttcagcaataacaa |
36325767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 187
Target Start/End: Original strand, 36309083 - 36309194
Alignment:
| Q |
82 |
gcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaa------ataatgacaatcacgaatgtcaagagattcaagaagagggcattt |
175 |
Q |
| |
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|||||||||| |||||||||||||| ||||||| |||||||||| |||| |||||| || ||||||||||||||||| ||| |||||||| || |
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| T |
36309083 |
gcaaatcattgatctgatcaatgcaccttttcttcaaactttcactcaattcaagataatgtcatcgacgaatgtcaagagatttaagcagagggcactt |
36309182 |
T |
|
| Q |
176 |
atcaataatggc |
187 |
Q |
| |
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| ||| |||||| |
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|
| T |
36309183 |
aacaagaatggc |
36309194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 16052979 - 16053092
Alignment:
| Q |
149 |
gtcaagagattcaagaagagggcatttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcatt |
248 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||||||||||| |||| | |||||| |||| ||| || |||||||||| || |||| || ||| |
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| T |
16052979 |
gtcaagagattcaagaaaagggcatttatcaagaatggcgagcaaaccatcattagtgaggttgtctcccttgatatcaagatagcatagattagtcatc |
16053078 |
T |
|
| Q |
249 |
gtttcagcaataac |
262 |
Q |
| |
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|| ||||||||||| |
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| T |
16053079 |
gtatcagcaataac |
16053092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 15936262 - 15936214
Alignment:
| Q |
149 |
gtcaagagattcaagaagagggcatttatcaataatggcgagcacacca |
197 |
Q |
| |
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||||||||||||||||| ||| |||||||||| ||||||||||| |||| |
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|
| T |
15936262 |
gtcaagagattcaagaaaaggccatttatcaagaatggcgagcaaacca |
15936214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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