View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2855_low_5 (Length: 271)

Name: NF2855_low_5
Description: NF2855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2855_low_5
NF2855_low_5
[»] chr2 (23 HSPs)
chr2 (24-271)||(10336277-10336524)
chr2 (24-271)||(9357616-9357869)
chr2 (45-181)||(10372393-10372529)
chr2 (45-271)||(10353554-10353789)
chr2 (36-162)||(9316579-9316705)
chr2 (114-181)||(12005658-12005725)
chr2 (211-269)||(9060772-9060830)
chr2 (36-178)||(9283643-9283785)
chr2 (45-269)||(9329034-9329267)
chr2 (210-271)||(10372303-10372364)
chr2 (211-271)||(9292361-9292421)
chr2 (45-181)||(10348314-10348450)
chr2 (210-271)||(9321409-9321470)
chr2 (45-271)||(8572967-8573196)
chr2 (111-178)||(9275056-9275123)
chr2 (45-91)||(7115114-7115160)
chr2 (210-268)||(10348227-10348285)
chr2 (211-271)||(9283827-9283887)
chr2 (137-176)||(12018445-12018484)
chr2 (123-181)||(12012095-12012153)
chr2 (211-268)||(9316464-9316521)
chr2 (132-181)||(14550903-14550952)
chr2 (113-169)||(8579032-8579088)
[»] chr8 (1 HSPs)
chr8 (24-271)||(41966164-41966420)
[»] scaffold0667 (1 HSPs)
scaffold0667 (24-271)||(4916-5166)
[»] chr3 (2 HSPs)
chr3 (36-170)||(37463041-37463175)
chr3 (210-271)||(37462931-37462992)
[»] chr4 (1 HSPs)
chr4 (210-271)||(26575306-26575367)
[»] chr1 (3 HSPs)
chr1 (123-170)||(29467333-29467380)
chr1 (213-271)||(29467429-29467486)
chr1 (137-177)||(29463514-29463554)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 24 - 271
Target Start/End: Complemental strand, 10336524 - 10336277
Alignment:
Q  24 agcaacaacatcgctcttcttggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcacat 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10336524 agcaacaacatcgctcttcttggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcgcat 10336425  T
Q  124 tctgtaatcctaccatccgtaaacatcggattatcccttatctccctcttcctattccctctcgttctcaatctgacaacatcactttatgcgttcacgg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10336424 tctgtaatcctaccatccgtaaacatcggattatcccttatctccctcttcctattccctctcgttctcaatctgacaacatcgctttatgcgttcacgg 10336325  T
Q  224 attcggttttgattcattatccgccgattacaaactcctcagaatctc 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10336324 attcggttttgattcattatccgccgattacaaactcctcagaatctc 10336277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 24 - 271
Target Start/End: Complemental strand, 9357869 - 9357616
Alignment:
Q  24 agcaacaacatcgctcttcttggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcacat 123  Q
    |||| ||||||  ||||| | |||||||| || |||||||||||||||||||||||||||||||||||||   | ||| || ||||||| |||||| ||     
T  9357869 agcaccaacatttctcttatcggttcatgtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaa 9357770  T
Q  124 tctgtaatcctaccatccgtaaacatcggattatcccttatctccctcttcctattccctctcgttct-caatctgacaacat------cactttatgcg 216  Q
    |||| || | || ||||||||||||||  ||||||||||  ||||||||||||| |||||  | |||| | ||||  ||||||      |  | ||||||    
T  9357769 tctggaaccataacatccgtaaacatcacattatccctttcctccctcttccta-tccctaacattctccgatctttcaacattgacggcggtgtatgcg 9357671  T
Q  217 ttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctc 271  Q
    ||||||| |||||||||||| | ||| ||| ||||||||||||||||||||||||    
T  9357670 ttcacggcttcggttttgatcctttaaccggcgattacaaactcctcagaatctc 9357616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 181
Target Start/End: Complemental strand, 10372529 - 10372393
Alignment:
Q  45 ggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcacattctgtaatcctaccatccgta 144  Q
    |||||||| || |||||||||||||||| ||| ||| || ||||||||| ||||||||    | ||||||||||||||||||| || |||| || |||||    
T  10372529 ggttcatgtaacggcctcctcgccatctgcaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgta 10372430  T
Q  145 aacatcggattatcccttatctccctcttcctattcc 181  Q
    ||||| || ||||||||| ||||||||||||||||||    
T  10372429 aacatagggttatcccttttctccctcttcctattcc 10372393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 271
Target Start/End: Complemental strand, 10353789 - 10353554
Alignment:
Q  45 ggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcacattctgtaatcctaccatccgta 144  Q
    |||||||| || |||||||||||||| ||| | |||| ||| ||||||||  | ||| || || |||| ||||||||| | || || || | || |||||    
T  10353789 ggttcatgtaacggcctcctcgccatgtcccacggcgtaatagctttcacgcatcctaacgcccccaacgaaatcacaatatggaaccccaacacccgta 10353690  T
Q  145 aacatcggattatcccttatctccctcttcctattccctctcgttctc-aatctgacaacatca-------ct--ttatgcgttcacggattcggttttg 234  Q
    | |||||||||||||||| ||||||||||||||| ||||  | ||||| |||||||||||   |       ||  ||||||||||| || ||||||||||    
T  10353689 agcatcggattatcccttttctccctcttcctat-ccctaacattctccaatctgacaaccctaaccgtggctgcttatgcgttcatggcttcggttttg 10353591  T
Q  235 attcattatccgccgattacaaactcctcagaatctc 271  Q
    ||||  |||||| ||||||||||||||||||||||||    
T  10353590 attctgtatccggcgattacaaactcctcagaatctc 10353554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 9316705 - 9316579
Alignment:
Q  36 gctcttcttggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcacattctgtaatccta 135  Q
    |||||||| |||||||| || ||||| |||||||| ||||||||  ||||||||||||   | ||||||  |||||| ||||||||| |||| || ||||    
T  9316705 gctcttctcggttcatgtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaacccta 9316606  T
Q  136 ccatccgtaaacatcggattatccctt 162  Q
     || |||||||||||| ||||||||||    
T  9316605 acacccgtaaacatcgtattatccctt 9316579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 12005658 - 12005725
Alignment:
Q  114 gaaatcacattctgtaatcctaccatccgtaaacatcggattatcccttatctccctcttcctattcc 181  Q
    |||||||| ||||| || |||| ||||||||||||||||||||||||| |||||||| ||||||||||    
T  12005658 gaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctccctattcctattcc 12005725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 9060772 - 9060830
Alignment:
Q  211 tatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatc 269  Q
    ||||||||||||| |||||||||||| ||||  ||||||||||||||||||||||||||    
T  9060772 tatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaatc 9060830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 178
Target Start/End: Original strand, 9283643 - 9283785
Alignment:
Q  36 gctcttcttggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcacattctgtaatccta 135  Q
    |||||| |||||||||| || |||||||||||||||| |||||||  ||| ||||| ||  | ||  ||  ||| | |||||||||| |||| ||  |||    
T  9283643 gctcttattggttcatgtaacggcctcctcgccatctacaatggcccaattgcttttacgcatccaaacgacgcaactgaaatcacaatctggaacacta 9283742  T
Q  136 ccatccgtaaacatcggattatcccttatctccctcttcctat 178  Q
     || |||||||||| |||||||||||| |||||||||||||||    
T  9283743 acacccgtaaacattggattatcccttttctccctcttcctat 9283785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 269
Target Start/End: Complemental strand, 9329267 - 9329034
Alignment:
Q  45 ggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcacattctgtaatcctaccatccgta 144  Q
    ||||||||||| |||||| | || |||||| ||||| |||||||||| |   ||||| ||  | |||| ||||||||| |||| || |||| || |||||    
T  9329267 ggttcatgcaacggcctcattgctatctcctatggccaaatcgcttttagggaccctaacggccccaacgaaatcacaatctggaaccctaacacccgta 9329168  T
Q  145 aacatcggattatcccttatctccctcttcctattccctctcgttctc-aatctgacaacatcact---------ttatgcgttcacggattcggttttg 234  Q
    ||||||| ||||||||||  || |||||| |||| ||||  | ||||  ||||||||||||||  |         |||||||||||||| ||||||||||    
T  9329167 aacatcgtattatccctttcctacctcttgctat-ccctaacattcttgaatctgacaacatccatcgcttctccttatgcgttcacggtttcggttttg 9329069  T
Q  235 attcattatccgccgattacaaactcctcagaatc 269  Q
    || | |||||||  |||||||||||||||||||||    
T  9329068 atcctttatccggtgattacaaactcctcagaatc 9329034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 10372364 - 10372303
Alignment:
Q  210 ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctc 271  Q
    ||||||||||| || |||||||||||||| ||||||| |||| |||||||||||||||||||    
T  10372364 ttatgcgttcatggcttcggttttgattctttatccggcgatcacaaactcctcagaatctc 10372303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 9292421 - 9292361
Alignment:
Q  211 tatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctc 271  Q
    ||||||||||||| ||||||| |||| ||||| ||| ||||||||||||||||||||||||    
T  9292421 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctc 9292361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 181
Target Start/End: Complemental strand, 10348450 - 10348314
Alignment:
Q  45 ggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcacattctgtaatcctaccatccgta 144  Q
    |||||||| || |||||||||||||||||||  || | ||||| ||||||  | ||| ||  |  ||| ||||||||| |||| || |||| || |||||    
T  10348450 ggttcatgtaacggcctcctcgccatctccacaggggtaatcgttttcacgcatcctaacaacctcaacgaaatcacaatctggaaccctaacacccgta 10348351  T
Q  145 aacatcggattatcccttatctccctcttcctattcc 181  Q
    ||||||  |||||||||| ||||||||||||||||||    
T  10348350 aacatcacattatcccttttctccctcttcctattcc 10348314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 9321470 - 9321409
Alignment:
Q  210 ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctc 271  Q
    ||||||||||| || |||||||||||| | ||| ||| ||||||||||||||||||||||||    
T  9321470 ttatgcgttcatggtttcggttttgatcctttaaccggcgattacaaactcctcagaatctc 9321409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 271
Target Start/End: Original strand, 8572967 - 8573196
Alignment:
Q  45 ggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcacattctgtaatcctaccatccgta 144  Q
    |||||||| || |||||||||||||| || |||||   ||||||||| ||| | ||| |   ||||||  ||||| || |||| || |||| || |||||    
T  8572967 ggttcatgtaacggcctcctcgccatttctaatggtttaatcgctttgactcaacctaatgacgccaaccaaatcgcaatctggaaccctaacacccgta 8573066  T
Q  145 aacatcggattatcccttatctccctcttcctattccctctcgttctcaatctgaca---acatcactttatgcgttcacggattcggttttgattcatt 241  Q
    ||||||  |||||||||| |||||||||||||||| |  ||| | ||| | ||||||   ||  |   ||||   ||||||| ||||||||||||  |||    
T  8573067 aacatcacattatcccttttctccctcttcctattactcctcatcctccacctgacatgtactgctacttatatcttcacggcttcggttttgatctatt 8573166  T
Q  242 atccgccgattacaaactcctcagaatctc 271  Q
    | |||||||||||||||||||| |||||||    
T  8573167 aaccgccgattacaaactcctccgaatctc 8573196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 9275123 - 9275056
Alignment:
Q  111 aatgaaatcacattctgtaatcctaccatccgtaaacatcggattatcccttatctccctcttcctat 178  Q
    |||||||| ||| |||| || |||| || | ||||||||||||||||||||| |||||||||||||||    
T  9275123 aatgaaattacaatctggaaccctaacaccggtaaacatcggattatcccttttctccctcttcctat 9275056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 7115114 - 7115160
Alignment:
Q  45 ggttcatgcaatggcctcctcgccatctccaatggcgaaatcgcttt 91  Q
    |||||||| || |||||||||||||||||||||||| ||||||||||    
T  7115114 ggttcatgtaacggcctcctcgccatctccaatggccaaatcgcttt 7115160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 10348285 - 10348227
Alignment:
Q  210 ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaat 268  Q
    |||||||||||||| ||||||||||||  | ||||||  ||||||||||||||||||||    
T  10348285 ttatgcgttcacggcttcggttttgatcaaatatccggtgattacaaactcctcagaat 10348227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 9283827 - 9283887
Alignment:
Q  211 tatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctc 271  Q
    ||||| ||||||| |||||||||||| | ||| ||| |||||||||||||||| |||||||    
T  9283827 tatgcattcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctc 9283887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 12018445 - 12018484
Alignment:
Q  137 catccgtaaacatcggattatcccttatctccctcttcct 176  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  12018445 catccgtaaacatcggattatccctcatctccctattcct 12018484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 12012095 - 12012153
Alignment:
Q  123 ttctgtaatcctaccatccgtaaacatcggattatcccttatctccctcttcctattcc 181  Q
    ||||| || |||| |||||||||||||| |||||||||| |||||||| || |||||||    
T  12012095 ttctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcc 12012153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 9316521 - 9316464
Alignment:
Q  211 tatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaat 268  Q
    ||||||||||||| |||||||||||| ||| | | |  ||||||||||||||||||||    
T  9316521 tatgcgttcacggcttcggttttgatccatcaacaggtgattacaaactcctcagaat 9316464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 14550952 - 14550903
Alignment:
Q  132 cctaccatccgtaaacatcggattatcccttatctccctcttcctattcc 181  Q
    |||| ||||||||||||||| ||||||||| |||||||| ||| ||||||    
T  14550952 cctaacatccgtaaacatcgcattatccctgatctccctattcttattcc 14550903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 8579032 - 8579088
Alignment:
Q  113 tgaaatcacattctgtaatcctaccatccgtaaacatcggattatcccttatctccc 169  Q
    ||||||| | ||||| || |||| |||||||||||||||  ||||||||||||||||    
T  8579032 tgaaatcgctttctggaaccctaacatccgtaaacatcgagttatcccttatctccc 8579088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 271
Target Start/End: Original strand, 41966164 - 41966420
Alignment:
Q  24 agcaacaacatcgctcttcttggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcacat 123  Q
    |||| ||||||| ||||||| |||||||| || |||||||||  |||||||||||||||||||| |||| |||||||||||  |   |||||||||||||    
T  41966164 agcaccaacatcactcttctgggttcatgtaacggcctcctctgcatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacat 41966263  T
Q  124 tctgtaatcctaccatccgtaaacatcggattatcccttatctccctcttcctat---tccctctcgttctcaatctgacaacatc-acttt-----atg 214  Q
    |||| || |||| |||| ||||||||||||||||||||| ||||||| |||||||   ||||  ||||||| || ||||| ||||| |||||      ||    
T  41966264 tctggaaccctaacatctgtaaacatcggattatcccttttctccctattcctattcctccccgtcgttctgaacctgacgacatcaactttgcctattg 41966363  T
Q  215 cgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctc 271  Q
    |||||||||||||||||||||| ||||| ||  |||| |||||||||||||||||||    
T  41966364 cgttcacggattcggttttgatccattaaccagcgatcacaaactcctcagaatctc 41966420  T

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Target: scaffold0667 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 271
Target Start/End: Complemental strand, 5166 - 4916
Alignment:
Q  24 agcaacaacatcgctcttcttggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcacat 123  Q
    |||| |||||| |||||| | |||||||| || |||||||||||| | ||||| |||||||||||| |||   | ||| || ||||||| |||||||||     
T  5166 agcaccaacattgctcttatcggttcatgtaacggcctcctcgccgtttccaacggcgaaatcgctctcagacatcctaacgccgccaacgaaatcacaa 5067  T
Q  124 tctgtaatcctaccatccgtaaacatcggattatcccttatctccctcttcctattccctctcgttctcaatctgac---aacatcactttatgcgttca 220  Q
    |||| || |||| ||||||||||||||  |||||||||| ||||||||| |||||| |  ||||||||| ||| |||   |||  | | |||||||||||    
T  5066 tctggaaccctaacatccgtaaacatcacattatcccttttctccctctacctattactcctcgttctccatccgacatgaactgctccttatgcgttca 4967  T
Q  221 cggattcggttttgattcattatccgccgattacaaactcctcagaatctc 271  Q
    ||| |||||||||||| | ||| ||| |||||||||| |||||||| ||||    
T  4966 cggcttcggttttgatcctttaaccggcgattacaaaatcctcagactctc 4916  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 170
Target Start/End: Complemental strand, 37463175 - 37463041
Alignment:
Q  36 gctcttcttggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcacattctgtaatccta 135  Q
    |||||| | |||||||| || ||||||||||| |||||||||||| |||||||||||||  | ||| || ||||||| ||||||||| |||| || ||||    
T  37463175 gctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaacccta 37463076  T
Q  136 ccatccgtaaacatcggattatcccttatctccct 170  Q
     ||  |||||||||| ||||||||||| |||||||    
T  37463075 acacacgtaaacatctgattatcccttttctccct 37463041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 37462992 - 37462931
Alignment:
Q  210 ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctc 271  Q
    |||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  37462992 ttatgcgttcacggcttcggttttgattctttaaccggcgattacaaactcctcagaatctc 37462931  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 26575367 - 26575306
Alignment:
Q  210 ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctc 271  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||    
T  26575367 ttatgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaatctc 26575306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 29467333 - 29467380
Alignment:
Q  123 ttctgtaatcctaccatccgtaaacatcggattatcccttatctccct 170  Q
    ||||| ||||||| ||||||||||||||||||||| ||| ||||||||    
T  29467333 ttctggaatcctaacatccgtaaacatcggattattcctaatctccct 29467380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 29467429 - 29467486
Alignment:
Q  213 tgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctc 271  Q
    ||||||||||| |||||||||||| ||||| |||  ||||||||||| |||||||||||    
T  29467429 tgcgttcacggcttcggttttgatccattaaccgatgattacaaact-ctcagaatctc 29467486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 29463514 - 29463554
Alignment:
Q  137 catccgtaaacatcggattatcccttatctccctcttccta 177  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  29463514 catccgtaaacattggattatcccttatccccctattccta 29463554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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