View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2855_low_7 (Length: 230)
Name: NF2855_low_7
Description: NF2855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2855_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 29851437 - 29851577
Alignment:
| Q |
1 |
taaaaacttaagaataaaaatggagaaaaccttgatgatcaccgatcagactttgttaatgggcacggagctccgaccaatgccatgactatcaaaatcg |
100 |
Q |
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| T |
29851437 |
taaaaacttaagaataaaaatggagaaaaccttgatgattagag--------ttgctaatgggcacagagctccgac----gccctgactatcaaaatcg |
29851524 |
T |
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| Q |
101 |
caatcctcgataccactaccggacccattgtcacttcctccactccaaaagac |
153 |
Q |
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| T |
29851525 |
caatcctcgataccaccaccggacttattgtcatctcctccactccaaaagac |
29851577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 29870336 - 29870468
Alignment:
| Q |
13 |
aataaaaatggagaaaaccttgatgatcaccgatcagactttgttaatgggcacggagctccgaccaatgccatgactatcaaaatcgcaatcctcgata |
112 |
Q |
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| T |
29870336 |
aataaaaatggagaaaaccttgatgatcagag--------ttgctaatgggcacgcagctctgacccacgccctcactatcaaaatcgcaatcctcgata |
29870427 |
T |
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| Q |
113 |
ccactaccggacccattgtcacttcctccactccaaaagac |
153 |
Q |
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| T |
29870428 |
ccaccaccggactcgttgtcacctcctccactccaaaagac |
29870468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 30747811 - 30747880
Alignment:
| Q |
90 |
tatcaaaatcgcaatcctcgataccactaccggacccattgtcacttcctccactccaaaagacttcgtc |
159 |
Q |
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| T |
30747811 |
tatcaaaatcgcaatcctcgataccactactggacccattgtcgcttcctccactctaaaagacttcgtc |
30747880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 30398529 - 30398633
Alignment:
| Q |
2 |
aaaaacttaagaataaaaatggagaaaaccttgatgatcaccgatcagactttgttaatgggcacggagctccgaccaatgccatgactatcaaaatcgc |
101 |
Q |
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| T |
30398529 |
aaaaacttaagaataaaaatggagtaaaccttgat-------gatcagac-ttgctaatgggcacagagctccgacccatgccccgattgtcaaaatcgc |
30398620 |
T |
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| Q |
102 |
aatcctcgatacc |
114 |
Q |
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||||||||||||| |
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| T |
30398621 |
aatcctcgatacc |
30398633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 30481478 - 30481551
Alignment:
| Q |
1 |
taaaaacttaagaataaaaatggagaaaaccttgatgatcaccgatcagactttgttaatgggcacggagctccgacc |
78 |
Q |
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| T |
30481478 |
taaaaacttaagaataaaaatcgagaaaaccttga----caccgatcagactttgctaatgggtacggagctctgacc |
30481551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 30679226 - 30679187
Alignment:
| Q |
2 |
aaaaacttaagaataaaaatggagaaaaccttgatgatca |
41 |
Q |
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| T |
30679226 |
aaaaacttaagaataaaaatggagaaaaccttgatgatca |
30679187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 30244328 - 30244267
Alignment:
| Q |
91 |
atcaaaatcgcaatcctcgataccactaccggacccattgtcacttcctccactccaaaaga |
152 |
Q |
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| T |
30244328 |
atcaaaatcgcaatcctcgatgccacgactggactcgttgtcacctcctccactccaaaaga |
30244267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 30481548 - 30481585
Alignment:
| Q |
122 |
gacccattgtcacttcctccactccaaaagacttcgtc |
159 |
Q |
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| T |
30481548 |
gacccattgtcacttcctccactccaaaagactgcgtc |
30481585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 30433962 - 30433993
Alignment:
| Q |
2 |
aaaaacttaagaataaaaatggagaaaacctt |
33 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
30433962 |
aaaaacttaagaataaaaatggagaaaacctt |
30433993 |
T |
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