View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2856-Insertion-11 (Length: 661)
Name: NF2856-Insertion-11
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856-Insertion-11 |
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| [»] scaffold0202 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 264 - 431
Target Start/End: Complemental strand, 31055710 - 31055546
Alignment:
| Q |
264 |
aacaaccaaaccttatcccactaaaggtggtcgtcggtcatagatcaaatggcactataatattttaaaaggtagtcatattttgtattctgcaagttta |
363 |
Q |
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| T |
31055710 |
aacaaccaaaccttatcccactaaaggtggtcg---gtcatagatcaaatgacaccataatgttttaaaaggtagccatattttgtattctgcaagttta |
31055614 |
T |
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| Q |
364 |
taatgaaaaagacgtgttagaccgtttttcttggtttcaattatctgcattaggctcaattttcttaa |
431 |
Q |
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| T |
31055613 |
taatgaaaaagacgtgttagaccgtttttcttggtttcaattatctgcattaagctcaattttcttaa |
31055546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 519 - 661
Target Start/End: Complemental strand, 31054271 - 31054129
Alignment:
| Q |
519 |
atttttggtagaaactttacataatgctgtattggactcatagtgttgcgcattctgcataaaaatacatcctattttaataaatacatacgaagaaaaa |
618 |
Q |
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| T |
31054271 |
atttttggtagaaactttacataatgatgtattggactcatagtgttgcgcattctgcataaaaatacatcctattttaataaatacatacgacgaaaaa |
31054172 |
T |
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| Q |
619 |
gccatttcagaacacaaatgttttgaaacacgacagctcaaaa |
661 |
Q |
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| T |
31054171 |
gccatttcagaacacaaatgttttgaaacacaacaactcaaaa |
31054129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 31056576 - 31056501
Alignment:
| Q |
189 |
ataaggttatataacatgtatatggggttcaacatctactcttcctccggataatccaaatcatgtaagatctacaac |
266 |
Q |
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| T |
31056576 |
ataaggttatataacatgtatacgg--ttcaacatctactcttcctccatataatccaaatcatgtaagatctacaac |
31056501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 519 - 588
Target Start/End: Original strand, 53451590 - 53451659
Alignment:
| Q |
519 |
atttttggtagaaactttacataatgctgtattggactcatagtgttgcgcattctgcataaaaatacat |
588 |
Q |
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| T |
53451590 |
atttttggtagaaactttacataatgctgtattggactcaaagtgttgcgcattctgcataaaaatacat |
53451659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 432 - 477
Target Start/End: Original strand, 53451477 - 53451522
Alignment:
| Q |
432 |
gagaaagaagagaagtgggtgaagcaaacaaatacacagacacata |
477 |
Q |
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| T |
53451477 |
gagaaagaagagcagtgggagaagcaaacaaatacatagacacata |
53451522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 6267 - 6319
Alignment:
| Q |
214 |
ggttcaacatctactcttcctccggataatccaaatcatgtaagatctacaac |
266 |
Q |
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| T |
6267 |
ggttcaacatctgcccttcctccagatgatccaaatcatgtaagatctacaac |
6319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 5760 - 5846
Alignment:
| Q |
34 |
agtcgtgagatttctgttagatttttaatctgctcatttcattaatttaagggtgtatatttactgtgaaattgttatgattccttct |
121 |
Q |
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| T |
5760 |
agtcgtgagatttatgtg-gatttatagtctgctcaattcattgatctaagggtgaatttttacagtgaaatggttatgattccttct |
5846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 19649 - 19558
Alignment:
| Q |
174 |
atatcatacgactcaataaggttatataacatgtatatggggttcaacatctactcttcctccggataatccaaatcatgtaagatctacaac |
266 |
Q |
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| T |
19649 |
atatgatacgattcaaaaaggtgatatatcatgtatgaggt-ttcaacatatgcccttcctccagatgatccaaatcatgtaagatctacaac |
19558 |
T |
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