View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2856-Insertion-12 (Length: 635)
Name: NF2856-Insertion-12
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856-Insertion-12 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 566; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 7 - 635
Target Start/End: Complemental strand, 49537923 - 49537276
Alignment:
| Q |
7 |
agatcgattatgccatcatcatgtttgtcctgatagagaactgggtgaaaatttgaagagttcaaaagaaagctagatgaatctgagtccattggtataa |
106 |
Q |
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| T |
49537923 |
agatcaattatgccatcatcatgtttgtcctgatagaaaactgagtgaaaatttgaagagttcaaaagaaagctagatgaatttgagtccattggtataa |
49537824 |
T |
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| Q |
107 |
tataatgtcctatgaaaaagtttagtggtcaatggctatgagtttcatttgtaagacttgctcatttataatgaaatattttgagtatctaagtggaaat |
206 |
Q |
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| T |
49537823 |
tataatgtcctatgaaaaagtttagtggtcaatggctatgagtttcatttgtaagacttgctcatttataatgaaatattttgagtatctaagtggaaat |
49537724 |
T |
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| Q |
207 |
tccaaaagcacatggaagacaagaaaacctactccattattaatcattgaatgcataaagcttatcttctgttactgtcaacatggaagacatggtaaaa |
306 |
Q |
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| T |
49537723 |
tccaaaagcacatggaagacaagaaaacctactccattattaatcattgaatgcataaagcttatcttctgttactgtcaacatggaagacatggtaaaa |
49537624 |
T |
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| Q |
307 |
acaaaacaccacaagaacaagggatggccaaattgatcctttacagaagttattctggattatgctacctaacattgcttcaaatgttcagactcttgta |
406 |
Q |
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| T |
49537623 |
acaaaacaccacaagaacaagggatggccaaattgatcctttacagaagttattctggattatgctacctaacattgcttcaaatgttcagactcttgta |
49537524 |
T |
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| Q |
407 |
tcagttttttaattgtgaaagtaactcaagaaagcaaatggaaagtattatatgatattgaatctgctgaaccaacatatatttcatttagaggtattga |
506 |
Q |
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| T |
49537523 |
tcagttttttaattgtgaaagtaactcaagaaagcaaatggaaagtattatatgatattgaatctgctgaaccaacatatatttcatttagaggtattga |
49537424 |
T |
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| Q |
507 |
tgtacccttctggctatacatttcttata-------------------actagcagaagttacagtgtatttaatgcatttatggtgcctgtactactat |
587 |
Q |
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| T |
49537423 |
tgtacccttctggctatacatttctcataactgcagtttcagtaatctactagcagaagttacagtgtatttaatgcatttatggtgcctgtactactat |
49537324 |
T |
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| Q |
588 |
cagaagttaccttggaatgcatagattaatgaaacacatggacataaa |
635 |
Q |
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| T |
49537323 |
cagaagttaccttggaatgcatagattaatgaaacacatggacataaa |
49537276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 200 - 394
Target Start/End: Complemental strand, 49553051 - 49552857
Alignment:
| Q |
200 |
tggaaattccaaaagcacatggaagacaagaaaacctactccattattaatcattgaatgcataaagcttatcttctgttactgtcaacatggaagacat |
299 |
Q |
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| T |
49553051 |
tggaaattccaaaggcacgtggaagacaagaaaacctactccattatcaatcattgaatgcataaagcttatcttctgttactgtcaacatggaagacat |
49552952 |
T |
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| Q |
300 |
ggtaaaaacaaaacaccacaagaacaagggatggccaaattgatcctttacagaagttattctggattatgctacctaacattgcttcaaatgtt |
394 |
Q |
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| T |
49552951 |
ggtaaaaacataacactgcaagaacaagagatggccaaattgatcctttacagaagttattctggattatgctacctaacattgctacaaatgtt |
49552857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 389 - 513
Target Start/End: Complemental strand, 49552837 - 49552709
Alignment:
| Q |
389 |
aatgttcagactcttgtatcagttttttaattgtgaaagtaactcaagaaagcaaatggaaag----tattatatga-tattgaatctgctgaaccaaca |
483 |
Q |
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| T |
49552837 |
aatgttcagact-ttgtgtcaattttttcattgtgaaagtagctcaagacaacaaatagaaaaaatatattaaacgaatattgaacctgctgaaccaaca |
49552739 |
T |
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| Q |
484 |
tatatttcatttagaggtattgatgtaccc |
513 |
Q |
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| T |
49552738 |
tatatttcatgtagaggtaacgatgtaccc |
49552709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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