View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2856-Insertion-17 (Length: 453)
Name: NF2856-Insertion-17
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856-Insertion-17 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 21 - 453
Target Start/End: Complemental strand, 47286105 - 47285673
Alignment:
| Q |
21 |
aaatcaaccaccatgaattctgataggttgatgaaatggttgtatggctacaacacaaccacatcatcacctgatagtaacaattttggcagtcatgctc |
120 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47286105 |
aaatcaaccaccatgaattttgataggttgatgaaatggttgtatggctacaacacaaccacatcatcacctgatagtaacaattttggcagtcatgctc |
47286006 |
T |
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| Q |
121 |
caggcatcatcaaatcaatacaaatgcttgaaacacagtttgaaaatctacatgcgtcatcaccatcatctgataataatgataggaatgatgtcatcaa |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47286005 |
caggcatcatcaaatcaatacaaatgcttgaaacacagtttgaaaatctacatgcgtcatcaccatcatctgataataatgttaggaatgatgtcatcaa |
47285906 |
T |
|
| Q |
221 |
caacaacgagatggtgttgaatacttcttctgcttatgctcatcctagtatccttggaggctcgtcatcaaattcacaacaccctccatctgaggcaaac |
320 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47285905 |
caacaatgagatggtgttgaatacttcttctgcttatgctcatcctagtatccttggaggctcgtcatcaaattcacaacaccctccatctgaggcaaat |
47285806 |
T |
|
| Q |
321 |
aatattgttgctactaatggtgtccgagcttcaaattgtaccaacatgaagaggaaaaaagaggatattcttgatgatggtagaatccacagtctacctc |
420 |
Q |
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| T |
47285805 |
aatattgttgctactaatggtgtccaggcttcaaattgtaccaacatgaagaggaaaaaagaggatattattgatgatggtagaatccacagtctacctc |
47285706 |
T |
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| Q |
421 |
acaataaacatggaccgtacacgtgtccagagt |
453 |
Q |
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| T |
47285705 |
acaataaacatggaccgtacacgtgttcagagt |
47285673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 449
Target Start/End: Complemental strand, 47307664 - 47307234
Alignment:
| Q |
16 |
ctcccaaatcaaccaccatgaattctgataggttgatgaaatggttgtatggctacaacacaaccacatcatcacctgatagtaacaattttggcagtca |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| || |||||| ||||| |
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| T |
47307664 |
ctccaaaatcaaccaccatgaattctgataggttgatgaaatggatgtatggctacaacacaaccaaatcatcagctgatacaaatggttttggtagtca |
47307565 |
T |
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| Q |
116 |
tgctccaggcatcatcaaatcaatacaaatgcttgaaacacagtttgaaaatctacatgcgtcatcaccatcatctgataataatgataggaatgatgtc |
215 |
Q |
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| T |
47307564 |
tgctccaggcatcataaaagcgatgcaaatgcttgacactcagtttgagaatctacatgcatcatcaccatcatc---------tgataggaatgatgtc |
47307474 |
T |
|
| Q |
216 |
atcaacaacaacgagatggtgttgaatacttcttctgcttatgctcatcctagtatccttggaggctcgtcatcaaattcacaacaccctccatctgagg |
315 |
Q |
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|||||||||||| |||||||||||||||||||||| |||| |||||||| | | |||||||||||||||| ||| |||||||||| || ||||||||| |
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| T |
47307473 |
atcaacaacaacaagatggtgttgaatacttcttccgcttttgctcatcttgatctccttggaggctcgtcttcacattcacaacaaccaccatctgaga |
47307374 |
T |
|
| Q |
316 |
caaacaatattgttgctactaatggtg------tccgagcttcaaattgtaccaacatgaagaggaaaaaagaggatattcttgatgatggtagaatcca |
409 |
Q |
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||||||||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||| || ||| ||||||||||||||| ||| |
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| T |
47307373 |
caaacaatattgttgctactaatggtgatgaaatccgggcttttaataataccaacatgaagaggaaaaaagaagaaattgttgatgatggtagaaccca |
47307274 |
T |
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| Q |
410 |
cagtctacctcacaataaacatggaccgtacacgtgtcca |
449 |
Q |
| |
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| T |
47307273 |
cagtctatcacacaataaaaatggaccatatacgtgtcca |
47307234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 22 - 342
Target Start/End: Complemental strand, 23109289 - 23108972
Alignment:
| Q |
22 |
aatcaaccaccatgaattctgataggttgatgaaatggttgtatggctacaacacaaccacatcatcacctgatagtaacaattttggcagtcatgctcc |
121 |
Q |
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||||||||| ||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| | ||| || | |||||| | | ||| || |
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| T |
23109289 |
aatcaaccatcatgagttctgatagattcatgaaatggttgtatggctacaacacaaccacatcatcagttaatactagtagttttggtaatgatgttct |
23109190 |
T |
|
| Q |
122 |
aggcatcatcaaatcaatacaaatgcttgaaacacagtttgaaaatctacatgcgtcatcaccatcatctgataataatgataggaatgatgtcatcaac |
221 |
Q |
| |
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||| ||||| |||||||| ||||| |||||| || |||| ||||||||||| ||||||||||||||| || |||| ||| |||||||||||| ||| |
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| T |
23109189 |
aggaatcataaaatcaatgcaaattcttgaagttcaatttgggaatctacatgcatcatcaccatcatcttttattaataatatgaatgatgtcataaac |
23109090 |
T |
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| Q |
222 |
aacaacgagatggtgttgaatacttcttctgcttatgctcatcctagtatccttggaggctcgtcatcaaattcacaacaccctccatctgaggcaaaca |
321 |
Q |
| |
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|||| |||| |||||||||||||||||||||||| ||||||| || |||| |||||||| |||||| |||||||||| | ||||| | |||||| |
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| T |
23109089 |
aacat---gatgatgttgaatacttcttctgcttatgatcatcctggtctcctaggaggctcatcatcacattcacaacaactgtcatctcacacaaaca |
23108993 |
T |
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| Q |
322 |
atattgttgctactaatggtg |
342 |
Q |
| |
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|| || |||||||| |||||| |
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| T |
23108992 |
atgttcttgctactgatggtg |
23108972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 42 - 301
Target Start/End: Original strand, 23108246 - 23108510
Alignment:
| Q |
42 |
gataggttgatgaaatggttgtatggctacaacacaaccacatcatcacctgatagtaacaattttggcagtcatgctccaggcatcatcaaatcaatac |
141 |
Q |
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||||| |||||||||||||||||||||||||||| || |||||||| | |||||| ||| | |||| | |||| ||||||| ||||| |||| ||| | |
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| T |
23108246 |
gatagattgatgaaatggttgtatggctacaacaaaatcacatcattagctgatactaattactttgataatcatactccaggaatcataaaataaatgc |
23108345 |
T |
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| Q |
142 |
aaatgcttgaaacacagtttgaaaatctacatgcgtcatcaccatcatctgataataatgataggaatgatgtcatcaac------aacaacgagatggt |
235 |
Q |
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|||| |||||| | || || | || |||||||| ||||| ||||||| || || |||| ||| ||||||||||||||| |||||| | |||| |
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| T |
23108346 |
aaattcttgaagctcaattcgggaaactacatgc-tcatctccatcatttgttagtaataatataaatgatgtcatcaacaacaaaaacaacatgttggt |
23108444 |
T |
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| Q |
236 |
gttgaatacttcttctgcttatgctcatcctagtatccttggaggctcgtcatcaaattcacaaca |
301 |
Q |
| |
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||||||||||||| ||||||||| | ||||| || | || ||||| || || ||| |||||||||| |
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| T |
23108445 |
gttgaatacttctcctgcttatgataatcctggtctactaggaggatcatcttcacattcacaaca |
23108510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 19736608 - 19736670
Alignment:
| Q |
21 |
aaatcaaccaccatgaattctgataggttgatgaaatggttgtatggctacaacacaaccaca |
83 |
Q |
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|||||||| ||||||||| |||||||||||||||||||| ||||||| |||||| ||||||| |
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| T |
19736608 |
aaatcaactaccatgaatactgataggttgatgaaatggatgtatggatacaacctaaccaca |
19736670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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