View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2856-Insertion-18 (Length: 429)

Name: NF2856-Insertion-18
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2856-Insertion-18
NF2856-Insertion-18
[»] chr6 (7 HSPs)
chr6 (7-202)||(34957096-34957286)
chr6 (51-254)||(7673034-7673237)
chr6 (51-263)||(7656309-7656520)
chr6 (88-263)||(12591226-12591402)
chr6 (59-175)||(1569663-1569778)
chr6 (189-262)||(629808-629881)
chr6 (189-262)||(2197003-2197076)
[»] chr2 (3 HSPs)
chr2 (7-262)||(18457686-18457946)
chr2 (211-263)||(29076026-29076078)
chr2 (88-262)||(43881958-43882132)
[»] scaffold0604 (1 HSPs)
scaffold0604 (84-204)||(7284-7404)
[»] chr5 (3 HSPs)
chr5 (55-158)||(11240882-11240985)
chr5 (189-263)||(13579007-13579081)
chr5 (187-263)||(22292770-22292846)
[»] chr3 (1 HSPs)
chr3 (188-262)||(31893429-31893503)
[»] chr8 (8 HSPs)
chr8 (343-407)||(15190433-15190497)
chr8 (55-141)||(129991-130077)
chr8 (88-171)||(45482965-45483048)
chr8 (263-336)||(15190275-15190347)
chr8 (216-258)||(23475897-23475939)
chr8 (216-262)||(41708415-41708461)
chr8 (197-262)||(9866132-9866197)
chr8 (206-262)||(32057265-32057321)
[»] chr7 (5 HSPs)
chr7 (59-175)||(15746533-15746648)
chr7 (189-266)||(13926122-13926199)
chr7 (200-263)||(38656870-38656933)
chr7 (56-201)||(44212757-44212903)
chr7 (206-262)||(13931841-13931897)
[»] chr4 (4 HSPs)
chr4 (188-262)||(43259800-43259874)
chr4 (87-262)||(47335965-47336141)
chr4 (223-263)||(47326275-47326315)
chr4 (223-263)||(47341071-47341111)
[»] chr1 (4 HSPs)
chr1 (56-142)||(48735013-48735099)
chr1 (216-262)||(28032875-28032921)
chr1 (216-262)||(48734910-48734956)
chr1 (216-262)||(10460578-10460624)
[»] scaffold1603 (1 HSPs)
scaffold1603 (216-262)||(286-332)


Alignment Details
Target: chr6 (Bit Score: 143; Significance: 6e-75; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 34957286 - 34957096
Alignment:
Q  7 aggaagagggaaaaggagactgaagtgaggttaaggatgtgtagtgttagtgtgaattgctactctgcattttcagatttggggggtgtattcagcaaaa 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |  ||||||||||||||||    
T  34957286 aggaagagggaaaaggagattgaagtgaggttaaggatgtgtagtgttagtgtgaattgctactctgctttttcagattt-gaaggtgtattcagcaaaa 34957188  T
Q  107 acaataaaaccaatactttctattaaaatatgtttcattttattattgatttaattttagcaggtaatccaaccccaccaaaaccgccacctgtcc 202  Q
    ||||||||||||||||||    || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34957187 acaataaaaccaatactt----tttaaatatggttcattttattattgatttaattttagcaggtaatccaaccccaccaaaaccgccacttgtcc 34957096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 51 - 254
Target Start/End: Original strand, 7673034 - 7673237
Alignment:
Q  51 tgttagtgtgaattgctactctgcattttcagatttggggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatgtttcattttatt 150  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7673034 tgttagtgtgaattgcttctctgcattttcagatttgggggatgtattcagcaaaaacaataaaaccaatattttctattaaaatatgtttcattttatt 7673133  T
Q  151 attgatttaattttagcaggtaatccaaccccaccaaaaccgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcatt 250  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| |||   | | |    |||| || ||||||||||||||| ||||||||||||    
T  7673134 attgatttaattttagtaggtaatcaaaccccaccaaaaccgccacctatccaaaattttgtgggttgggcatggtgcacaaatcttatatttgtgcatt 7673233  T
Q  251 ctaa 254  Q
    ||||    
T  7673234 ctaa 7673237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 51 - 263
Target Start/End: Complemental strand, 7656520 - 7656309
Alignment:
Q  51 tgttagtgtgaattgctactctgcattttcagatttggggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatgtttcattttatt 150  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7656520 tgttagtgtgaattgctactttgcattttcagatttgaggggtgtattaagcaaaaacaataaaaccaatattttctattaaaatatgtttcattttatt 7656421  T
Q  151 attgatttaattttagcaggtaatccaaccccaccaaaaccgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcatt 250  Q
    ||| |||||||||||| |||||| |||| || |||||||| |||||||||||   | | |    |||| || ||||||||||||||| ||||||||||||    
T  7656420 atttatttaattttagtaggtaa-ccaaacctaccaaaactgccacctgtccagaattttctgggttgcgcatggtgcacaaatcttatatttgtgcatt 7656322  T
Q  251 ctaaatgccacca 263  Q
    |||||||||||||    
T  7656321 ctaaatgccacca 7656309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 88 - 263
Target Start/End: Complemental strand, 12591402 - 12591226
Alignment:
Q  88 gggggtgtattcagcaaaaacaataaaaccaa-tactttctattaaaatatgtttcattttattattgatttaattttagcaggtaatccaaccccacca 186  Q
    |||||||||| ||||||||||||||||||||| || |||  |||| |||||||||| |||||||||| ||||| ||| ||||||| | || |||||||||    
T  12591402 gggggtgtatccagcaaaaacaataaaaccaaatatttttcattataatatgtttccttttattatttatttattttcagcaggtcaccccaccccacca 12591303  T
Q  187 aaaccgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacca 263  Q
    |||| ||||||||||| | || ||     |||||| |||||||||||| ||| ||||||||||  ||||||||||||    
T  12591302 aaactgccacctgtccataaaagtgttgtttgtgcatggtgcacaaattttgcatttgtgcatattaaatgccacca 12591226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 1569778 - 1569663
Alignment:
Q  59 tgaattgctactctgcattttcagatttggggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatg-tttcattttattattgatt 157  Q
    |||||||||  ||||||||||||| ||  |||||||| | ||||||||||||||||||||||| ||||||||| |||||| |||| |||||||| |||||    
T  1569778 tgaattgctgttctgcattttcagttt--gggggtgtttccagcaaaaacaataaaaccaatattttctattataatatgttttccttttattaatgatt 1569681  T
Q  158 taattttagcaggtaatc 175  Q
    || ||| |||||||||||    
T  1569680 tattttcagcaggtaatc 1569663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 629881 - 629808
Alignment:
Q  189 accgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 262  Q
    ||||||| ||||||||| ||| | || |||||| ||||||||||||||||||||||||||||||||||| ||||    
T  629881 accgccagctgtccttccatggaaaaattgtgcatggtgcacaaatcttgtatttgtgcattctaaatggcacc 629808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 2197003 - 2197076
Alignment:
Q  189 accgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 262  Q
    ||||||| ||||||||| ||  | || |||||| ||||||||||||||   |||||||||| ||||||||||||    
T  2197003 accgccagctgtccttccatacaaaaattgtgcatggtgcacaaatctatcatttgtgcatgctaaatgccacc 2197076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 18457686 - 18457946
Alignment:
Q  7 aggaagagggaaaaggagactgaagtgaggttaaggatgtgtag-----tgttagtgtgaattgctactctgcattttcagatttggggggtgtattcag 101  Q
    ||||||||| ||||||||| ||||||||| || | |||||| ||     ||||||||||||||||| |||||||||||| |||||| ||||||||| |||    
T  18457686 aggaagaggaaaaaggagattgaagtgagattcaagatgtgcagcgacgtgttagtgtgaattgcttctctgcattttcggatttgaggggtgtatacag 18457785  T
Q  102 caaaaacaataaaaccaatactttct-attaaaatatgtttcattttattattgatttaattttagcaggtaatccaaccccaccaaaaccgccacctgt 200  Q
    |||||||||||||||||||| ||||| |||| |||||||||  |||||||| | ||||| ||||||||||| |||||||||||||||||||||||  |||    
T  18457786 caaaaacaataaaaccaata-tttctcattataatatgttttcttttattaattatttatttttagcaggtcatccaaccccaccaaaaccgccatttgt 18457884  T
Q  201 ccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 262  Q
    ||||||||| |||| || ||| ||||||||||||||| ||||||||||||||||||||||||    
T  18457885 ccttcaatgcacaatttttgcatggtgcacaaatcttatatttgtgcattctaaatgccacc 18457946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 29076026 - 29076078
Alignment:
Q  211 acaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacca 263  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29076026 acaagttgtgcatggtgcacaaatcttgtatttgtgcattctaaatgccacca 29076078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 262
Target Start/End: Original strand, 43881958 - 43882132
Alignment:
Q  88 gggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatgtttcattttattattgatttaattttagcaggtaatccaaccccaccaa 187  Q
    |||||||||| ||| |||| ||||| |||||||| |||| |||| |||||||||| |||||||| || |||| ||| ||||||| |   ||| ||  |||    
T  43881958 gggggtgtatccagtaaaagcaatataaccaatattttccattataatatgtttccttttattaatggtttattttcagcaggtcaaataacacccacaa 43882057  T
Q  188 aaccgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 262  Q
    ||| |||||||||||   ||| |     ||| || || |||||||||||| ||||||||||||||||||||||||    
T  43882058 aactgccacctgtccagaaatttgtggtttgggcatgatgcacaaatcttatatttgtgcattctaaatgccacc 43882132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 7404 - 7284
Alignment:
Q  84 tttggggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatgtttcattttattattgatttaattttagcaggtaatccaacccca 183  Q
    |||||||||||||| ||||||||||||||||||||||| |||| |||| |||||||||| |||||||||| ||||| ||| ||||||| | || ||||||    
T  7404 tttggggggtgtatccagcaaaaacaataaaaccaatattttccattataatatgtttccttttattatttatttattttcagcaggtcaccccacccca 7305  T
Q  184 ccaaaaccgccacctgtcctt 204  Q
    ||||||| | |||||||||||    
T  7304 ccaaaactgtcacctgtcctt 7284  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 11240882 - 11240985
Alignment:
Q  55 agtgtgaattgctactctgcattttcagatttggggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatgtttcattttattattg 154  Q
    |||||||||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||| |||| |||| |||||||||| |||||||| ||    
T  11240882 agtgtgaattgctactctgcatttccaaatttcgggggtgtcttcagcaaaaacaataaaaccaatattttccattataatatgtttccttttattaatg 11240981  T
Q  155 attt 158  Q
    ||||    
T  11240982 attt 11240985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 13579007 - 13579081
Alignment:
Q  189 accgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacca 263  Q
    ||||||| ||||||||| ||| ||||||||||| || ||||||||||||| |||||||||| |||||||||||||    
T  13579007 accgccaactgtccttccatgcacaagttgtgcatgatgcacaaatcttgcatttgtgcatactaaatgccacca 13579081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 22292770 - 22292846
Alignment:
Q  187 aaaccgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacca 263  Q
    ||||||||| ||||||||| |||   || |||||| ||||||||||||||   |||||||||| |||||||||||||    
T  22292770 aaaccgccagctgtccttccatgggaaaattgtgcatggtgcacaaatctatcatttgtgcatactaaatgccacca 22292846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 31893429 - 31893503
Alignment:
Q  188 aaccgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 262  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  31893429 aaccgccacctgtccttcaatgcacaaattgtgcatggtgcacaaatcttgtatttgtgcattctaaatgccacc 31893503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 15190433 - 15190497
Alignment:
Q  343 atgcaaaagcagagaacacatgtgttgccgacattctaggatcaacctaccttccttccgttttc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  15190433 atgcaaaagcagagaacacatgtgttgccgacattctaggatccacctaccttccttcctttttc 15190497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 129991 - 130077
Alignment:
Q  55 agtgtgaattgctactctgcattttcagatttggggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatgttt 141  Q
    |||||||||||||||||||||||||||||||| ||||||||   ||||||||||||||||| ||||| |||| |||| |||||||||    
T  129991 agtgtgaattgctactctgcattttcagattttgggggtgtcaccagcaaaaacaataaaatcaatattttcaattataatatgttt 130077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 45482965 - 45483048
Alignment:
Q  88 gggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatgtttcattttattattgatttaattttagcaggt 171  Q
    |||||||||| ||| ||||||||||||||||||| |||  |||| |||||||||| |||||||||| ||||| ||| |||||||    
T  45482965 gggggtgtatccagaaaaaacaataaaaccaatatttttcattataatatgtttccttttattatttatttattttcagcaggt 45483048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 336
Target Start/End: Original strand, 15190275 - 15190347
Alignment:
Q  263 agtaaacacgtccaacaaaatccaacatcttaaacggtctctttccccatgcccttgcattctttccacccttt 336  Q
    |||||||| |||||||||||| |||||  |||||| |||||||| ||  |||||||||||||||||||||||||    
T  15190275 agtaaacatgtccaacaaaattcaacactttaaacagtctcttt-cctgtgcccttgcattctttccacccttt 15190347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 23475939 - 23475897
Alignment:
Q  216 ttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgc 258  Q
    |||||| ||||||||||||||| |||||||| |||||||||||    
T  23475939 ttgtgcatggtgcacaaatcttatatttgtgtattctaaatgc 23475897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 41708461 - 41708415
Alignment:
Q  216 ttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 262  Q
    |||||| |||||||||||| |  ||||||||||||||||||||||||    
T  41708461 ttgtgcatggtgcacaaatttaatatttgtgcattctaaatgccacc 41708415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 9866197 - 9866132
Alignment:
Q  197 ctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 262  Q
    ||||||||| ||| | || |||||| ||||||||||||||   |||||||||| ||||||||||||    
T  9866197 ctgtccttccatggaaaaattgtgcatggtgcacaaatctatcatttgtgcatgctaaatgccacc 9866132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 32057321 - 32057265
Alignment:
Q  206 aatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 262  Q
    |||| ||||||||||| |||||||||||||||    |||||||| ||||||||||||    
T  32057321 aatgcacaagttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 32057265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 15746533 - 15746648
Alignment:
Q  59 tgaattgctactctgcattttcagatttggggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatg-tttcattttattattgatt 157  Q
    |||||||||  ||||||||||||| ||  |||||||| | ||||||||||||||||||||||| ||||||||| |||||| |||| |||||||| |||||    
T  15746533 tgaattgctgttctgcattttcagttt--gggggtgtttccagcaaaaacaataaaaccaatattttctattataatatgttttccttttattaatgatt 15746630  T
Q  158 taattttagcaggtaatc 175  Q
    || ||| |||||||||||    
T  15746631 tattttcagcaggtaatc 15746648  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 13926122 - 13926199
Alignment:
Q  189 accgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccaccagta 266  Q
    ||||||| ||||||||| ||  | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13926122 accgccagctgtccttccatacaaaagttgtgcatggtgcacaaatcttgtatttgtgcattctaaatgccaccagta 13926199  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 200 - 263
Target Start/End: Complemental strand, 38656933 - 38656870
Alignment:
Q  200 tccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacca 263  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  38656933 tccttcaatgcacaagttgtgtatggtgcacaaatcttgtatttgtgcattctaaatgccacca 38656870  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 44212903 - 44212757
Alignment:
Q  56 gtgtgaattgctactctgcat-tttcagatttggggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatgtttcattttattattg 154  Q
    ||||||||| |||||||  || ||| || ||||| ||||||||  |||||||||||||||||||||| |||  |||| |||||||||  |||||||| ||    
T  44212903 gtgtgaattactactctcaatgtttaagttttggagggtgtatctagcaaaaacaataaaaccaatatttttcattataatatgttttcttttattaatg 44212804  T
Q  155 atttaattttagcaggtaatccaaccccaccaaaaccgccacctgtc 201  Q
     |||| |||||||| || | || |||||||||||||| ||| |||||    
T  44212803 gtttatttttagcaagtcaccccaccccaccaaaacctccatctgtc 44212757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 13931841 - 13931897
Alignment:
Q  206 aatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 262  Q
    |||| ||||||||||| |||||||||||||||    |||||||| ||||||||||||    
T  13931841 aatgcacaagttgtgcatggtgcacaaatctttcccttgtgcatgctaaatgccacc 13931897  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 188 - 262
Target Start/End: Complemental strand, 43259874 - 43259800
Alignment:
Q  188 aaccgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 262  Q
    |||||||||||||||||||||| | || |||||| |||||||||||| |||||||||||||||||||||||||||    
T  43259874 aaccgccacctgtccttcaatgcataaattgtgcatggtgcacaaattttgtatttgtgcattctaaatgccacc 43259800  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 87 - 262
Target Start/End: Complemental strand, 47336141 - 47335965
Alignment:
Q  87 ggggggtgtattcagcaaaaacaataaaaccaa-tactttctattaaaatatgtttcattttattattgatttaattttagcaggtaatccaaccccacc 185  Q
    ||||||||||  || |||||||||||||||||| || |||| |||| |||||||||  |||||||||| ||||| ||| ||||||| | || ||||||||    
T  47336141 ggggggtgtaaccaccaaaaacaataaaaccaaatattttccattataatatgttttcttttattatttatttattttcagcaggtcaccccaccccacc 47336042  T
Q  186 aaaaccgccacctgtccttcaatgtacaagttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 262  Q
    ||||| | |||| |||| | || ||     |||||| ||||||||||||| || |||||||||| | ||||||||||    
T  47336041 aaaactgtcaccagtccataaaagtgttgtttgtgcatggtgcacaaatcatgcatttgtgcataccaaatgccacc 47335965  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 47326275 - 47326315
Alignment:
Q  223 tggtgcacaaatcttgtatttgtgcattctaaatgccacca 263  Q
    |||||||||||||||| ||||||| || |||||||||||||    
T  47326275 tggtgcacaaatcttgcatttgtgtatactaaatgccacca 47326315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 47341071 - 47341111
Alignment:
Q  223 tggtgcacaaatcttgtatttgtgcattctaaatgccacca 263  Q
    |||||||||||||||| ||||||| || |||||||||||||    
T  47341071 tggtgcacaaatcttgcatttgtgtatactaaatgccacca 47341111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 48735099 - 48735013
Alignment:
Q  56 gtgtgaattgctactctgcattttcagatttggggggtgtattcagcaaaaacaataaaaccaatactttctattaaaatatgtttc 142  Q
    ||||||||||||||||||||||||||| ||||| ||||||   ||||||||||||||||||||||| |||| |||| ||||||||||    
T  48735099 gtgtgaattgctactctgcattttcagttttggagggtgtcaccagcaaaaacaataaaaccaatattttccattataatatgtttc 48735013  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 28032921 - 28032875
Alignment:
Q  216 ttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 262  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  28032921 ttgtgcatggtgcacaaatcttatatttgtgcattctaaatgccacc 28032875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 48734956 - 48734910
Alignment:
Q  216 ttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 262  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  48734956 ttgtgcatggtgcacaaatcttatatttgtgcattctaaatgccacc 48734910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 10460578 - 10460624
Alignment:
Q  216 ttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 262  Q
    |||||| |||||||||||| | |||||||||||||||||||||||||    
T  10460578 ttgtgcatggtgcacaaatttggtatttgtgcattctaaatgccacc 10460624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 286 - 332
Alignment:
Q  216 ttgtgcttggtgcacaaatcttgtatttgtgcattctaaatgccacc 262  Q
    |||||| |||||||||||| || ||||||||||||||||||| ||||    
T  286 ttgtgcatggtgcacaaattttatatttgtgcattctaaatggcacc 332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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