View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2856-Insertion-2 (Length: 1011)
Name: NF2856-Insertion-2
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856-Insertion-2 |
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| [»] scaffold0175 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 377 - 1008
Target Start/End: Original strand, 32243621 - 32244252
Alignment:
| Q |
377 |
gataaacttgtgtgtgtgtatatatatgttccatttgtttttgcgctgtttttagtctatgacgttgacacgggacctgacggtggattaagacgtaaga |
476 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32243621 |
gataaacttgtgtgtgtgtgtatatatgttccatttgtttttgcgctgtttttagtctatgacgttgacacgggacatgacggtggattaagacgtaaga |
32243720 |
T |
|
| Q |
477 |
gaattcataataatagtaaaccaaaccttaaatctcggcatgttccattttatctttcaacnnnnnnnnngaaggattttatctttcaacttcttaaccg |
576 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32243721 |
gaattcataataatagtaaaccaaaccttaaatctcggcatgttccattttatctttcaactttttttttgaaggattttatctttcaacttcttaaccg |
32243820 |
T |
|
| Q |
577 |
agaattcatatggtttatgcctcgattttgttaaaaatcagttaaaacattaannnnnnnngaaggaacagtaagaataatttaaaatacatatagttgt |
676 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32243821 |
agaattcatatggtttatgcctcgattttgttaaaaatcagttaaaacattaattttttttgaaggaacagtaagaataatttaaaatacatatagttgt |
32243920 |
T |
|
| Q |
677 |
ctttttgtgactcctaaaattgcattttaatattattttttcctgattttatcgtgaatccgttacaannnnnnnnnnnnatatttcttcattaaaatgt |
776 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
32243921 |
ctttttatgactcctaaaattgcattttaatattattttttcctgattttatcgtgaatccgttacaattttttttt---atatttcttcattaaa-tgt |
32244016 |
T |
|
| Q |
777 |
caagttaggctcaagaattgacctcaaactttctaaggtcataagtgactgacccgtagtcattctcttgctaatatgtatgggagatgtcaacttaata |
876 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244017 |
caagttaggctcaagaattgacctcaaactttctaaggtcataagtgactgaaccgtagtcattctcttgctaatatgtatgggagatgtcaacttaata |
32244116 |
T |
|
| Q |
877 |
gttagagcttgactctgcaaccttaacgagcaaagtttggatttcacctaaaacagttatgtatt-aaaaaggtatattgaatagtagtagacatatcaa |
975 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32244117 |
gttagagcttgactctgcaaccttaacgatcaaagtttggatttcacctaaaacagttatgtattaaaaaaggtatattgaatagtagtagacatatcaa |
32244216 |
T |
|
| Q |
976 |
---tatccttgcaaatataatagacattatcaaatt |
1008 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
32244217 |
attaatccttgcaaatataatagacattatcaaatt |
32244252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 7 - 343
Target Start/End: Original strand, 32243283 - 32243619
Alignment:
| Q |
7 |
aaaaagatatacatatctttctgcttatggatgtcatgatggaatgtgtgctattatatgtacaagtttccaattgtaggtcttttatcaagtaggtccc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32243283 |
aaaaagatatacatatctttctgcttatggatgtcatgatggaatgtgtgctattatatgtacaagtttccaattgtaggtcttttatcaagtaggtccc |
32243382 |
T |
|
| Q |
107 |
aatttgattgaagaattttttgatgaggaagtacataaatggtggttaatgaaatatggtgggaacatacaccatagaactctccgattaatgcaacatg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32243383 |
aatttgattgaagaattttttgatgaggaagtacataaatggtggttaatgaaatatgatgggaacatacaccatagaactctccgattaatgcaacatg |
32243482 |
T |
|
| Q |
207 |
gtggacttggacaattctgtcaatgatactatggccaattctgaaattgtcactgttttaaggactaacttgggcttcgttgttgtttttatttatagtc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32243483 |
gtggacttggacaattctgtcaatgatactatggccaattctgaaattgtcactgttttaaggactaacttgggcttcgttgttgtttctatttatagtc |
32243582 |
T |
|
| Q |
307 |
ctactaattctatatgtaatttggagtttagatcttt |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
32243583 |
ctactaattctatatgtaatttggagtttagatcttt |
32243619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 681 - 961
Target Start/End: Original strand, 46733308 - 46733586
Alignment:
| Q |
681 |
ttgtgactcctaaaattgcattttaatattattttttcctgattttatcgtgaatccgttacaannnnnnnnnnnnatatttcttcattaaaatgtcaag |
780 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||||| | |||||||| ||||||||||||||| | |||||||| ||||| ||||||| |
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| T |
46733308 |
ttgtgactcctaaaattgcacttttatattatttttttccgattttatggtgaatccgttacaattttttcttt--acatttcttcgttaaa-tgtcaag |
46733404 |
T |
|
| Q |
781 |
ttaggctcaagaattgacctcaaactttctaaggtcataagtgactgacccgtagtcattctcttgctaatatgtatgggagatgtcaacttaatagtta |
880 |
Q |
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|||||||||||||| ||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
46733405 |
ttaggctcaagaatagacctcaaattttctaaggttgtaagtgactgaaccgtagtcattctcttgctaatatgtctgggagatgtcagcttaatagtta |
46733504 |
T |
|
| Q |
881 |
gagcttgactctgcaaccttaacgagcaaagtttggatttcacctaaaacagttatgtatt-aaaaaggtatattgaatagt |
961 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||| |
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| T |
46733505 |
gagcttgactctgcaaccttaacgagcaaagtttggatttcaccttaaacggttatgtattgaaaaaggtatattgaatagt |
46733586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 2e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 661 - 961
Target Start/End: Complemental strand, 30704040 - 30703742
Alignment:
| Q |
661 |
aaatacatatagttgtctttttgtgactcctaaaattgcattttaatattattttttcctgattttatcgtgaatccgttacaannnnnnnnnnnnatat |
760 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||||||||||| | || |
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| T |
30704040 |
aaatacatataactgtctttttgtgactcctaaaattgcacttttatattattttttttcgattttatggtgaatccgttacaattttttcttt--acat |
30703943 |
T |
|
| Q |
761 |
ttcttcattaaaatgtcaagttaggctcaagaattgacctcaaactttctaaggtcataagtgactgacccgtagtcattctcttgctaatatgtatggg |
860 |
Q |
| |
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|||||| ||||| | ||||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| |||| |
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|
| T |
30703942 |
ttcttcgttaaa-tatcaagttaggcccaagaatagacctcaaactttctaaggttgtaagtgactgaaccgtagtcattctcttgctgatatgtttggg |
30703844 |
T |
|
| Q |
861 |
agatgtcaacttaatagttagagcttgactctgcaaccttaacgagcaaagtttggatttcacctaaaacagttatgtatt-aaaaaggtatattgaata |
959 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
30703843 |
agatgtcagcttaatagttagagcttgactctgcaaccttaacaagcaaagtttggatttcacctaaaacggttatgtattgaaaaaggtatattgaata |
30703744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 552 - 616
Target Start/End: Complemental strand, 30704208 - 30704144
Alignment:
| Q |
552 |
attttatctttcaacttcttaaccgagaattcatatggtttatgcctcgattttgttaaaaatca |
616 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
30704208 |
attttatctttcaacttcttaatcgagaattcatatggattatgcttcgattttgttaaaaatca |
30704144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 492 - 537
Target Start/End: Complemental strand, 30704239 - 30704194
Alignment:
| Q |
492 |
gtaaaccaaaccttaaatctcggcatgttccattttatctttcaac |
537 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30704239 |
gtaaactaaaccttaaatctcggcatgttccattttatctttcaac |
30704194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 285 - 354
Target Start/End: Complemental strand, 27251 - 27182
Alignment:
| Q |
285 |
gttgttgtttttatttatagtcctactaattctatatgtaatttggagtttagatctttggcatattgat |
354 |
Q |
| |
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||||||||||| | || || || ||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
27251 |
gttgttgttttgagttttaatcttactaattctatatgtaatttggagtttagaactttgacatattgat |
27182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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