View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2856-Insertion-20 (Length: 249)
Name: NF2856-Insertion-20
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856-Insertion-20 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0599 (2 HSPs) |
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| [»] scaffold0042 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 12634502 - 12634743
Alignment:
| Q |
8 |
agagagtgttatgtggttattactcttacctttggatttcttcttcccattcaatataatgcattgcttgacaattgttgtaatctaactttgcaagctc |
107 |
Q |
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| T |
12634502 |
agagagtgttatgtggttattactcttacctttggatttcttcttcccattcattataatgcattgcttgacaattgttgtaatctaactttgcaagctc |
12634601 |
T |
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| Q |
108 |
gaggtaaatatcattgttcacgtacggcatcctatcagaattgagtaatttcatttgttagtaagtgaattcacattcaatgtaaaattaagactcttac |
207 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12634602 |
gaggtaaatatcattgttcatgtacggcatcctatcagaattgagtaatttcatttgttagtaagtgaattcacattcaatgtaaaattaagactcttac |
12634701 |
T |
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| Q |
208 |
ctgtaaagggtcttgccaatccaaacatcattttcaccacca |
249 |
Q |
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| T |
12634702 |
ctgtaaagggtcttgccaatccaaacatcattttcaccacca |
12634743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 31151391 - 31151524
Alignment:
| Q |
8 |
agagagtgttatgtggttattactcttacctttggatttcttcttcccattcaatataatgcattgcttgacaattgttgtaatctaactttgcaagctc |
107 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31151391 |
agagagtgttatgtggtttttattcttacctttggatttct---tcccattcatcataatgcattgcttgacaatagttgtaatctaactttgcaagctc |
31151487 |
T |
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| Q |
108 |
gaggtaaatatcattgttcacgtacggcatcctatca |
144 |
Q |
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| T |
31151488 |
aagataaacatcattgttcacgtacggcatcctatca |
31151524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 31151651 - 31151722
Alignment:
| Q |
178 |
tcacattcaatgtaaaattaagactcttacctgtaaagggtcttgccaatccaaacatcattttcaccacca |
249 |
Q |
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| T |
31151651 |
tcacattcaatgtaaaattaagattcttacctgtaaagggtcttaccaatccaaacatcattttcgccacca |
31151722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 3168 - 3044
Alignment:
| Q |
20 |
gtggttattactcttacctttggatttcttcttcccattcaatataatgcattgcttgacaattgttgtaatctaactttgcaagctcgaggtaaatatc |
119 |
Q |
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||||||| ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||| ||| |
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| T |
3168 |
gtggttactacccttacctttggatttcttctttccattcatcataatgcattgcttgacaattgttgtaatccaactttgcaagctcaagttaaacatc |
3069 |
T |
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| Q |
120 |
attgttcacgtacggcatcctatca |
144 |
Q |
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|||| ||| |||||||||||||||| |
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| T |
3068 |
attggtcatgtacggcatcctatca |
3044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 2912 - 2847
Alignment:
| Q |
183 |
ttcaatgtaaaattaagactcttacctgtaaagggtcttgccaatccaaacatcattttcaccacc |
248 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2912 |
ttcaatgtaaaattaagattcttacctgtaaagggtcttgccaatccaaacatcattttcaccacc |
2847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 11431 - 11555
Alignment:
| Q |
20 |
gtggttattactcttacctttggatttcttcttcccattcaatataatgcattgcttgacaattgttgtaatctaactttgcaagctcgaggtaaatatc |
119 |
Q |
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||||||| ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||| ||| |
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| T |
11431 |
gtggttactacccttacctttggatttcttctttccattcatcataatgcattgcttgacaattgttgtaatccaactttgcaagctcaagataaacatc |
11530 |
T |
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| Q |
120 |
attgttcacgtacggcatcctatca |
144 |
Q |
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|||| ||| |||||||||||||||| |
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| T |
11531 |
attggtcatgtacggcatcctatca |
11555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 11687 - 11752
Alignment:
| Q |
183 |
ttcaatgtaaaattaagactcttacctgtaaagggtcttgccaatccaaacatcattttcaccacc |
248 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11687 |
ttcaatgtaaaattaagattcttacctgtaaagggtcttgccaatccaaacatcattttcaccacc |
11752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 11911474 - 11911350
Alignment:
| Q |
20 |
gtggttattactcttacctttggatttcttcttcccattcaatataatgcattgcttgacaattgttgtaatctaactttgcaagctcgaggtaaatatc |
119 |
Q |
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||||||| ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |
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| T |
11911474 |
gtggttactacccttacctttggatttcttctttccattcatcataatgcattgcttgacaattgttgtaatccaactttgcaagctcaaggtaaacatc |
11911375 |
T |
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| Q |
120 |
attgttcacgtacggcatcctatca |
144 |
Q |
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|||| || |||||||||||||||| |
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| T |
11911374 |
attggccatgtacggcatcctatca |
11911350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 11911218 - 11911153
Alignment:
| Q |
183 |
ttcaatgtaaaattaagactcttacctgtaaagggtcttgccaatccaaacatcattttcaccacc |
248 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11911218 |
ttcaatgtaaaattaagattcttacctgtaaagggtcttgccaatccaaacatcattttcaccacc |
11911153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 37960199 - 37960068
Alignment:
| Q |
10 |
agagtgttatgtggttattactcttacctttggatttcttcttcccattcaatataatgcattgcttgacaattgttgtaatctaactttgcaagctcga |
109 |
Q |
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|||||||| | |||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||||||||||||| ||| |||||||||| | |
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| T |
37960199 |
agagtgttctctggttattactcttacctgtgtatttcttt---ccattcatcataatgcattgcttgacaattgttgtaatccaaccttgcaagctcaa |
37960103 |
T |
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| Q |
110 |
ggtaaatatcattgttcacgtacggcatcctatca |
144 |
Q |
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| |||| |||||||||||| ||||||||||||||| |
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| T |
37960102 |
gataaacatcattgttcacatacggcatcctatca |
37960068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 37959937 - 37959870
Alignment:
| Q |
182 |
attcaatgtaaaattaagactcttacctgtaaagggtcttgccaatccaaacatcattttcaccacca |
249 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37959937 |
attcaatgtaaaattaagattcttacctataaagggtcttgccaatccaaacatcattttcaccacca |
37959870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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