View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2856-Insertion-21 (Length: 237)
Name: NF2856-Insertion-21
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856-Insertion-21 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 91 - 232
Target Start/End: Original strand, 24207668 - 24207808
Alignment:
| Q |
91 |
caaacagaatcatgattcctacaagtatcaagatctacactgcgttgtgctccttgtagaaatttcatgacctttccaattctcgataatttctcttatg |
190 |
Q |
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| T |
24207668 |
caaagagaatcatgcttcctacaagcatcaagatctacactatgctgtgctcctcgtagcaattccatgacctttccaattctcgat-acttctcttatg |
24207766 |
T |
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| Q |
191 |
tttaagtacacagcaacttaagggccacacttgtgcctgttg |
232 |
Q |
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| T |
24207767 |
tttaagtacacagcaacttaagggccacgcttgtgcctgttg |
24207808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 24207516 - 24207592
Alignment:
| Q |
7 |
agtattagaaccttattacttcttgaaataaacaagcataaaagataacattctaggctaccttaccaataccattc |
83 |
Q |
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| T |
24207516 |
agtattagaaccttattatttcttgaaataaagaagcataaaagatagcattctaggctaccttactaataccattc |
24207592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 2464143 - 2464075
Alignment:
| Q |
13 |
agaaccttattacttcttgaaataaacaagcataaaagataacattctaggctaccttaccaataccatt |
82 |
Q |
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| T |
2464143 |
agaaccttattactccttgaa-taaacaagcataaaagatagcattctaggctactttactaataccatt |
2464075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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