View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2856-Insertion-3 (Length: 953)
Name: NF2856-Insertion-3
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 437 - 870
Target Start/End: Complemental strand, 27833036 - 27832624
Alignment:
| Q |
437 |
gttgtaggaacgtcataacgcataagcctaaggagacagatgcaaaaaattatcaattccaattattatcggcaacgtacagcactgaaatcactatagt |
536 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27833036 |
gttgtaggaaagacataacgcataagcctaaggagacagatgcaaaaaattatcaattccaattattatcggcaacgtacagcactgaaatcactatagt |
27832937 |
T |
|
| Q |
537 |
ataagcaaatcagagactctaaattgttgcctattctctcaatcaaaacagaaagcatcaataattacatgcaataaccgaagaagcctcggattcaaga |
636 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||| | ||| ||||||||||| ||||||||| |
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| T |
27832936 |
ataagcaaatcagagactctaaattgttgcctattatttcaatcaaaacagaaa---tgaat-----------------gaagaagcctcagattcaaga |
27832857 |
T |
|
| Q |
637 |
attattgtatcgatcaaagaataatctctcagatggtacggacaatattcatacatcactggcaaataattaataatgatatgataaaaatataggtcgt |
736 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27832856 |
attattgtatcgatcaaagaataatctctcagatggtacggacaatattcatacatcacaggcaaataattaataatgatatgataaaaatataggtcgt |
27832757 |
T |
|
| Q |
737 |
taccaggccctcaaatcaagtcaaagatcaaagagagcagacatgcggaccttaagaaattcaattttcgtgcacacagcaatgcttccttcattgtttt |
836 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27832756 |
taccaggccctcaaatcaagtcaaagatcaaagagagcagacatgcggaccttaagaaattcaattttcgtgcacacagcaatgcttccttcattgtttt |
27832657 |
T |
|
| Q |
837 |
catccagagcatcgggcttattgtgcacgaattc |
870 |
Q |
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| T |
27832656 |
catccagagcatc-ggcttattgtgcacgaattc |
27832624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 400 - 570
Target Start/End: Complemental strand, 27845638 - 27845468
Alignment:
| Q |
400 |
aaaaagtaacgaaaatctaactaagtaaagcttccaagttgtaggaacgtcataacgcataagcctaaggagacagatgcaaaaaattatcaattccaat |
499 |
Q |
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|||| ||||| ||| |||||| ||||||| || | | |||||| |||| | |||| |||||||||| | |||||| |||||| || ||||||| ||| |
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| T |
27845638 |
aaaatgtaacaaaactctaacgaagtaaaactactaggttgtacgaacatgataatgcataagccttggaagacaggtgcaaataaaattcaattcaaat |
27845539 |
T |
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| Q |
500 |
tattatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagactctaaattgttgcctat |
570 |
Q |
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| T |
27845538 |
tattatcggcaacgtacaacactgaaatcactatagtataagcaaagcagagactttaaattgttgcctat |
27845468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 722 - 875
Target Start/End: Complemental strand, 27827839 - 27827691
Alignment:
| Q |
722 |
aaaaatataggtcgttaccaggccctcaaatcaagtcaaagatcaaagagagcagacatgcggaccttaagaaattcaattttcgtgcacacagcaatgc |
821 |
Q |
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|||||| ||||||||||||||||||| ||||||| |||||||||| |||| |||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
27827839 |
aaaaatgtaggtcgttaccaggccctaaaatcaaatcaaagatcatagagggcagacatgcggacct---aaaatttaattttcgtgcacacagcaatga |
27827743 |
T |
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| Q |
822 |
ttccttcattgttttcatccagagcatcgggcttattgtgcacgaattcgttta |
875 |
Q |
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| T |
27827742 |
ttccttcatt-cttaattccagaccatc-ggcttattgtgcacgaatttgttta |
27827691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 31871940 - 31871988
Alignment:
| Q |
155 |
tacatttacaacaaatctaaaagcaaaaatctgagcagcccatttcata |
203 |
Q |
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| T |
31871940 |
tacatttacaacaaatctaagagcaaaaatctgagcagcacatttcata |
31871988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 800 - 877
Target Start/End: Complemental strand, 27845306 - 27845231
Alignment:
| Q |
800 |
attttcgtgcacacagcaatgcttccttcattgttttcatccagagcatcgggcttattgtgcacgaattcgtttata |
877 |
Q |
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| T |
27845306 |
attttcgtgcacacaacaatgcttccttcattgtttt-attcagagcatc-gacttattgtgcacatattcatttata |
27845231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 497 - 568
Target Start/End: Complemental strand, 27291461 - 27291390
Alignment:
| Q |
497 |
aattattatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagactctaaattgttgcct |
568 |
Q |
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| T |
27291461 |
aattgttatcggcaacgtacagcactgaaatcactattgatcgagcgaatcagagactctaaattgttgcct |
27291390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 497 - 568
Target Start/End: Complemental strand, 27292052 - 27291981
Alignment:
| Q |
497 |
aattattatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagactctaaattgttgcct |
568 |
Q |
| |
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| T |
27292052 |
aattattattggcaacgtacagcactgaaatcactatcaaataaatgaatcagagactctaaattgttgcct |
27291981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 501 - 568
Target Start/End: Complemental strand, 27298825 - 27298758
Alignment:
| Q |
501 |
attatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagactctaaattgttgcct |
568 |
Q |
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| T |
27298825 |
attattggcaacgtacagcactgaaatcactattaaataagtgaatcagagactctaaattgttgcct |
27298758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 497 - 568
Target Start/End: Complemental strand, 27304484 - 27304413
Alignment:
| Q |
497 |
aattattatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagactctaaattgttgcct |
568 |
Q |
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| T |
27304484 |
aattattattggcaacgtacagcactgaaatcaccatcaaataagtgaatcagagactctaatttgttgcct |
27304413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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