View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2856-Insertion-5 (Length: 836)
Name: NF2856-Insertion-5
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856-Insertion-5 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| |
|
| [»] scaffold0742 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0024 (Bit Score: 765; Significance: 0; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 8 - 836
Target Start/End: Complemental strand, 115574 - 114747
Alignment:
| Q |
8 |
aaatgatgtgattcgcctagatgatgactatgactagtttcatgtatatatatgtggaatggaaacacagacccaattttcaatcttgtatcagaaacat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
115574 |
aaatgatgtgattcgcctagatgatgactatgactagtttcatgtatatatatgtggaatggaaacacagacccaattttcaatcttgtaccagaaacat |
115475 |
T |
|
| Q |
108 |
tggtgttataagcctccaccattctccaaccatgatcaaatggtttatctttgctccatatagcattggaagtgaaaccagctctaagttatcattcctt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
115474 |
tggtgttataagcctccaccattctccaaccatgatcaaatggtttatctttgctccatatagcattggaagtgaaaacagctctaagttattattcctt |
115375 |
T |
|
| Q |
208 |
ataggacttgcaatttcaaatagaaacactccaatgttcactgatgccaatatacctctgcaccaaacataacaacatagagggatgaaaaagagttatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
115374 |
ataggacttgcaatttcaaatagaaacactccaatgttcactgatgccaatatacctctgcaccaaacataacaacatagagggatgaaaaagagttatt |
115275 |
T |
|
| Q |
308 |
tataatatgtaagatgatagacaattgagtaaataggtaaattggtcctcaaaattgtatgcatatgtcaaaatagcccctgaattctgtatattgacaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
115274 |
tataatatgtaagatgatagacaattgagaaaataggtaaattggtcctcaaaattgtatgcatatgtcaaaatagcccctgaattttgtatattgacga |
115175 |
T |
|
| Q |
408 |
atacatccctaaaaatgtagtgttggtcaaaccgacatctttgatcgatgcttacaatttcgaggaccaacttacctcttcactctataattgttattag |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
115174 |
atacatccctaaaaatgtagtgttggtcaaaccgacatctttgatcgatgcttacaattttgaggaccaacttacttcttcactctataattgctattag |
115075 |
T |
|
| Q |
508 |
aaaaattaaaccgtgattattggtcacgctccgcactgccaacaagagtagagtttgaaaagacaaaacaagaatttatgatagatcaagacttacatga |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
115074 |
aaaaattaaaccgtgattattggtcacgctccgtactaccaacaagagtagagtttgaaaagacaaaacaagaatttatgacagatcaagacttacatga |
114975 |
T |
|
| Q |
608 |
ggtaaagactggatgtatcatttagctgatcatgtgaatctatagcagatattgaaccactaacaccttgtattcttcttatattgacataagtatttgg |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
114974 |
ggtaaagactggatgtatcatttagctgatcatgtgaatctatagcagatattgaaccactaacaccttgtattcttcttatattgacataagtatttgg |
114875 |
T |
|
| Q |
708 |
tttcctaaaatttgttctttgagtatcttgggtgagaatttgtttcggagctaaactttcatccttagaattttcaacataagatgccacaagagattct |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
114874 |
tttcctaaaatttgttctttgagtatcttggctgagaatttgtttcggagctaaactttcatccttggaattttcaacataagatgccacaagagattct |
114775 |
T |
|
| Q |
808 |
tggtttatgccctgcatacaaaaaattta |
836 |
Q |
| |
|
||||||||| ||||||||||||||||||| |
|
|
| T |
114774 |
tggtttatg-cctgcatacaaaaaattta |
114747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 583 - 832
Target Start/End: Complemental strand, 121829 - 121585
Alignment:
| Q |
583 |
ttatgatagatcaagacttacatgaggtaaagactggatgtatcatttagctgatcatgtgaatctatagcagatattgaaccactaacaccttgtattc |
682 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||| ||||||||| |||||| ||||| |
|
|
| T |
121829 |
ttatgagatatcaagacttacatgaggtaaaggctggaa-tatcatttagctgatcatgtgaatctctagcagatactgaaccacttacacctgttattc |
121731 |
T |
|
| Q |
683 |
ttcttatattgacataagtatttggtttcctaaaatttgttctttgagtatcttgggtgagaatttgtttcggagctaaactttcatccttagaattttc |
782 |
Q |
| |
|
|||||||||| ||||| | |||||| ||||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
121730 |
ttcttatattcccataaat---tggttttctaaaatttgttcttcgagtatcttggctaagaatttgttttggagctaaactttcatccttaaaattttc |
121634 |
T |
|
| Q |
783 |
aacataagatgccacaagagattcttggtttatgccctgcatacaaaaaa |
832 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
121633 |
aacatcagatgccacaagatattcttggtatatg-tctgcatacaaaaaa |
121585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0742 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0742
Description:
Target: scaffold0742; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 597 - 660
Target Start/End: Complemental strand, 611 - 548
Alignment:
| Q |
597 |
gacttacatgaggtaaagactggatgtatcatttagctgatcatgtgaatctatagcagatatt |
660 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
611 |
gacttacatgaggtaaatactggatgcatcatttagatgatcatgtgaatctatagcagatatt |
548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University