View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2856-Insertion-7 (Length: 736)
Name: NF2856-Insertion-7
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856-Insertion-7 |
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| [»] scaffold0018 (3 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 624; Significance: 0; HSPs: 3)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 7 - 733
Target Start/End: Original strand, 150764 - 151480
Alignment:
| Q |
7 |
actatttttcttggtgttgttcaaggatcatgagaagagttagtaattgcatagaaataagaaatgcagaggagaatgtcactaatagccagcaaaacct |
106 |
Q |
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| T |
150764 |
actatttttcttggtgttgttcaaggatcatgagaagagttagtaattgcatagaaataagaaatgcagaggagaatgtcactaatagccagcaaaacct |
150863 |
T |
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| Q |
107 |
tgtggtggttgatcttgttgatagtgtacttgctactcattcttcatgaactattaataatgtttcaaactactgtaaaaattaatctattactgccaaa |
206 |
Q |
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| T |
150864 |
tgtggtggttgatcttgttgatagtgtacttgctactcattcttcatgaactattaataatgtttcaaactactgtaaaaattaatctattactgccaaa |
150963 |
T |
|
| Q |
207 |
tattttaagattttgaataattacttttacttagatataaaattaatctagttgttataagatataaaatacttcaaaaatcctttaatgtaatttctat |
306 |
Q |
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| T |
150964 |
tattttaagattttgaataattacttttacttagat----------tctagttgttataagatataaaatacttcaaaaatcctttaatgtaatttctat |
151053 |
T |
|
| Q |
307 |
gttagctagaataaataaggttaacatgacacataatgtgccatattaattgcatgttcctttcaacactattgatagagaccttgaaatgttagacatc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
151054 |
gttagctagaataaataaggttaacatgacacataatgtgccatattaattgcatgttcctttcaacactattgatagagaccttgaaatgttagacatc |
151153 |
T |
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| Q |
407 |
cattccatgtcacataactttggtaacaagtttcatatgtaaatgctaacttaatgtaagaattcatgcttaatttcttttgagattgctgcacatactt |
506 |
Q |
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| T |
151154 |
cattccatgttacataactttggtaacaagtttcatatgtaaatgctaacttaatgtaagaattcatgcttaatttcttttgagattgctgcacatactt |
151253 |
T |
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| Q |
507 |
atgaagaccaatgcaaattagttagtttgataattttaaaagttcagacaataagatttcttttgagatttctttattaaggctaaattataattttagt |
606 |
Q |
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| T |
151254 |
atgaagatcaatgcaaattagttagtttgataattttaaaagttcagacaacaagatttcttttgtgatttctttattaaggctaaattatatttttagt |
151353 |
T |
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| Q |
607 |
tccttaattaattttgaagtttcactttgatccataattaataaaattttcattttggtctcttaatttcatctccgtcaaccaatttgatcacactccg |
706 |
Q |
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| T |
151354 |
cccttaattaatttttaagtttcactttgatccctaattaataaaagttttattttggtcccttaatttcatctccgtcaaccaatttgatcacacttcg |
151453 |
T |
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| Q |
707 |
ttaactttaatccaaaatgtccaagat |
733 |
Q |
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|||| ||||| ||||||| |||||| |
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| T |
151454 |
ttaattttaacttaaaatgttcaagat |
151480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 27 - 243
Target Start/End: Original strand, 142852 - 143067
Alignment:
| Q |
27 |
tcaaggatcatgagaagagttagtaattgcatagaaataagaaatgcagaggagaatgtcactaatagccagcaaaaccttgtggtggttgatcttgttg |
126 |
Q |
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||||||||| ||| |||||| ||| ||||| ||||| |||||||||||| ||||||||||| ||||||||||||| || |||||| |||| ||||||| |
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| T |
142852 |
tcaaggatcgtgacaagagtacgtagttgcacagaaacaagaaatgcagaagagaatgtcacaaatagccagcaaatcccagtggtgattgagcttgttg |
142951 |
T |
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| Q |
127 |
atagtgtacttgctactcattcttcatgaactattaataatgtttcaaactactgtaaaaattaatctatta--ctgccaaatattttaagattttgaat |
224 |
Q |
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| T |
142952 |
atagtgtactggctgctcatgcttcatgaac-att--tcatgtttcatactactgtaaaaattagattattatgctgccaaatatttaaagatattgtat |
143048 |
T |
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| Q |
225 |
aattacttttacttagata |
243 |
Q |
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| T |
143049 |
aattaattttaattagata |
143067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 608 - 724
Target Start/End: Complemental strand, 152157 - 152040
Alignment:
| Q |
608 |
ccttaattaattttgaagtttcactttgatcca-taattaataaaattttcattttggtctcttaatttcatctccgtcaaccaatttgatcacactccg |
706 |
Q |
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|||||||||||||| || ||||| |||| ||| |||||||||||| ||| | ||| ||| |||||||||||||||||||||||||||| || | || | |
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| T |
152157 |
ccttaattaatttttaaatttcattttgctcccctaattaataaaagttttacttttgtcccttaatttcatctccgtcaaccaatttggtcctaatctg |
152058 |
T |
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| Q |
707 |
ttaactttaatccaaaat |
724 |
Q |
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| T |
152057 |
ttaattttaacccaaaat |
152040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 24988872 - 24988956
Alignment:
| Q |
73 |
cagaggagaatgtcactaatagccagcaaaaccttgtggtggttgatcttgttgatagtgtacttgctactcattcttcatgaac |
157 |
Q |
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| T |
24988872 |
cagaggagaatgtcactaatagccagcaaattctagtagtggttgagtttgttgataatgtactggctgctcatgcttcatgaac |
24988956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 24912191 - 24912282
Alignment:
| Q |
73 |
cagaggagaatgtcactaatagccagcaaaaccttgtggtggttgatcttgttgatagtgtacttgctactcattcttcatgaactattaat |
164 |
Q |
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| T |
24912191 |
cagaggagaatgtcactaatagccagcaaattctagtagtggttgagtttgtcgataatgtactggctgctcatgcttcatgaacaattaat |
24912282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 24899945 - 24900028
Alignment:
| Q |
73 |
cagaggagaatgtcactaatagccagcaaaaccttgtggtggttgatcttgttgatagtgtacttgctactcattcttcatgaa |
156 |
Q |
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| T |
24899945 |
cagaggagaatgtcactaatagccagcaaattctagtagtggttgagtttgttgataatgtactggctgcgcatgcttcatgaa |
24900028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 25143 - 25228
Alignment:
| Q |
73 |
cagaggagaatgtcactaatagccagcaaaaccttgtggtgg-ttgatcttgttgatagtgtacttgctactcattcttcatgaac |
157 |
Q |
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| T |
25143 |
cagaggagaatgtcactaatagccagcaaattctagtagtggtttgagtttgttgataatgtactggctgctcatgcttcatgaac |
25228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 680
Target Start/End: Original strand, 45421103 - 45421198
Alignment:
| Q |
586 |
aggctaaattataattttagttccttaattaattttgaagtttcactttgat-ccataattaataaaattttcattttggtctcttaatttcatct |
680 |
Q |
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||||||||||| | ||| || ||||||||||||| ||||||||||||| | || |||||||||||| |||| |||| ||| |||||||||||| |
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| T |
45421103 |
aggctaaattacatatttggtcccttaattaatttctaagtttcactttggtcccctaattaataaaagtttcgttttagtcctttaatttcatct |
45421198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 581 - 639
Target Start/End: Original strand, 9393335 - 9393393
Alignment:
| Q |
581 |
tattaaggctaaattataattttagttccttaattaattttgaagtttcactttgatcc |
639 |
Q |
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| T |
9393335 |
tattaaggcttaattacatttttagttccttaattaattatgtggtttcattttgatcc |
9393393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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