View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2856-Insertion-8 (Length: 698)
Name: NF2856-Insertion-8
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856-Insertion-8 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 8 - 466
Target Start/End: Original strand, 33116717 - 33117167
Alignment:
| Q |
8 |
gtatacacaaggatgtcctagcaaattgggttggcttgcactgattggattggctctctatatactgttcttttcacctggaatggggactgttccatgg |
107 |
Q |
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| T |
33116717 |
gtatacacaaggatgtcctagcaaattgggttggcttgcactgattggattggctctctatatactgttcttttcacctggaatggggactgttccatgg |
33116816 |
T |
|
| Q |
108 |
gtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtgtttggatctcaaaccttattgtttctcaatcct |
207 |
Q |
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| T |
33116817 |
gtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtgtttggatctcaaaccttattgtttctcaatcct |
33116916 |
T |
|
| Q |
208 |
ttttatctctcacacaagctattggagttgcatggacattcatgttgtttggaattgttgctgtcatagcaattttctttgtcctcgttttcgtaccaga |
307 |
Q |
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| T |
33116917 |
ttttatctctcacacaagctattggagttgcatggacattcatgttgtttggaattgttgctgtcatagcaagttcctttgtcctcgttttcgtaccaga |
33117016 |
T |
|
| Q |
308 |
aaccaaaggtgttccaattgaggaagtggagaagatacttgaacaaaggactctgcaattcaagttttggaataagagaatcgcctctcagaatggttga |
407 |
Q |
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| T |
33117017 |
aaccaaaggtgttccaattgaggaagtggagaagatgcttcaacaaaggactctgcaattcaagttttggaataagagaatcgcctctcagaagggttga |
33117116 |
T |
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| Q |
408 |
gttagtttatgttagttttaaggtttatgactattttcttaggatctgcattaataatg |
466 |
Q |
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| T |
33117117 |
gtcagtttgagtta--------gtttatgactattttcttaggatctgcattaataatg |
33117167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 504 - 698
Target Start/End: Original strand, 33117205 - 33117397
Alignment:
| Q |
504 |
ggattaccagcttaaaaaataagtggaatgaat--------tgtgaatataaaattatactactcaacatttggtaaattagagctttcactgtttcaca |
595 |
Q |
| |
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| T |
33117205 |
ggattaccagcttaaaaaataagtggaatgaatatccacattgtgaatataaaattatgctactcaacatttggtaaattagagctttcactgtttcaca |
33117304 |
T |
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| Q |
596 |
tctcaaatatctaatcgttttgtctttttgtttttaatattctttattcacgctcattcacaatgatggcaaggattcttgcttggtgtttactatactt |
695 |
Q |
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| T |
33117305 |
tctcaaatatctaatcgttttgtctttttgttttcaatattcttt----------attcacaatgatggcaaggattcttgcttggtgtttactatactt |
33117394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 33119996 - 33120136
Alignment:
| Q |
75 |
ttcttttcacctggaatggggactgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtg |
174 |
Q |
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| T |
33119996 |
ttcttttcaccaggaatgggaacggttccatgggttatcaactctgaaatacaccctttaaggtatagaggaatatgtggaggaatagcatcaacaacag |
33120095 |
T |
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| Q |
175 |
tttggatctcaaaccttattgtttctcaatcctttttatct |
215 |
Q |
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| T |
33120096 |
tgtgggtctctaacctcattgtttctcaatcctttttatct |
33120136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 75 - 339
Target Start/End: Complemental strand, 21492014 - 21491750
Alignment:
| Q |
75 |
ttcttttcacctggaatggggactgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtg |
174 |
Q |
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| T |
21492014 |
ttcttctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagcatcaacaacag |
21491915 |
T |
|
| Q |
175 |
tttggatctcaaaccttattgtttctcaatcctttttatctctcacacaagctattggagttgcatggacattcatgttgtttggaattgttgctgtcat |
274 |
Q |
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| T |
21491914 |
tgtgggtttccaaccttgttgtttctcaatcattcttaagtttgaccgtagcaattggacctgcttggactttcatgatatttgcaatcattgctattgt |
21491815 |
T |
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| Q |
275 |
agcaattttctttgtcctcgttttcgtaccagaaaccaaaggtgttccaattgaggaagtggaga |
339 |
Q |
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| T |
21491814 |
tgccattttctttgtcatcatttttgtgccagagactaaaggggtaccaatggaggaagtggaga |
21491750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 21558574 - 21558479
Alignment:
| Q |
75 |
ttcttttcacctggaatggggactgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaaca |
170 |
Q |
| |
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| T |
21558574 |
ttcttctcaccaggaatgggaacagttccatgggttgtaaactctgaaatatatccattaagatacagaggaatatgtggaggaatcgcgtcaaca |
21558479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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