View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2856-Insertion-9 (Length: 685)
Name: NF2856-Insertion-9
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856-Insertion-9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 668; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 8 - 683
Target Start/End: Complemental strand, 51144846 - 51144171
Alignment:
| Q |
8 |
atatatgctgtaaaacaaaataaaagtttcaatattaattttcggcagtgtacatacagttcgaatggaacctattgtctgctctactacacctgctgat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51144846 |
atatatgctgtaaaacaaaataaaagtttcaatattaattttcggcagtgtacatacagttcgaatggaacctattgtctgctctactacacctgctgat |
51144747 |
T |
|
| Q |
108 |
ttagaataagctgcttgtccagttgatgatgcttttgcaataaccatactcgtcatagaaccagacaagataagaagtggtatactagatagcatgacaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51144746 |
ttagaataagctgcttgtccagttgatgatgcttttgcaataaccatactcgtcatagaaccagacaagataagaagtggtatactagatagcatgacaa |
51144647 |
T |
|
| Q |
208 |
cagttagaagccatccttttgtgaatgctatgacaaaacctcctatgaaagttgacataaactgtatgaactgtcccacctgaaatcgaaggagggggga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51144646 |
cagttagaagccatccttttgtgaatgctatgacaaaacctcctatgaaagttgacataaactgtatgaactgtcccacctgaaatcgaaggagggggga |
51144547 |
T |
|
| Q |
308 |
caataaagaacttaaagtctcatttttaggtagtcgataaaaacaaaaatggtggttattaaaagtagtatgatgtaacgtttcactgataccttctcac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51144546 |
caataaagaacttaaagtctcatttttaggtagtcgataaaaacaaaaatggtggttattaaaagtagtatgatgtaacgtttcactgataccttctcac |
51144447 |
T |
|
| Q |
408 |
ccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatcttgcctcaaaat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51144446 |
ccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatcttgcctcaaaat |
51144347 |
T |
|
| Q |
508 |
tgttttaaggtataaccctctaattcttgcactctgtctctccccggtgatcatccagcaagttaattctggtacatagcaaacagattttatttaagtt |
607 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
51144346 |
tgttttaagatataaccctctaattcttgcactctgtctctccccggtgatcatccagcaagttaattctggtatatagcaaacagattttatttaagtt |
51144247 |
T |
|
| Q |
608 |
tagttcataatgtaccaaaccaataattagattgtaagaactaactgagaaactaatgcacttacgcaaaaatgac |
683 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51144246 |
tagttcataatgtaccaaaccaataattagattgtaagaactaactgagaaactaatgcacttacgcaaaaatgac |
51144171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 30 - 683
Target Start/End: Complemental strand, 51155963 - 51155315
Alignment:
| Q |
30 |
aaagtttcaatattaattttcggcagtgtacatacagttcgaatggaacctattgtctgctctactacacctgctgatttagaataagctgcttgtccag |
129 |
Q |
| |
|
||||||||||| ||| |||| | | ||||| ||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
51155963 |
aaagtttcaatgttattttttgctaatgtacttacagttcggatggaacctattgtctgctcaactacacttgctgatttagaataagctgcctgtccag |
51155864 |
T |
|
| Q |
130 |
ttgatgatgcttttgcaataaccatactcgtcatagaaccagacaagataagaagtggtatactagatagcatgacaacagttagaagccatccttttgt |
229 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||| ||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || || |
|
|
| T |
51155863 |
ttgatgatgcttttgcaataaccaaactcatcatagcaccagacaagactacaagtggtatactagatagcatgacgacagttagaagccatcccttagt |
51155764 |
T |
|
| Q |
230 |
gaatgctatgacaaaacctcctatgaaagttgacataaactgtatgaactgtcccacctgaaatcgaaggaggggggacaataaagaacttaaagtctca |
329 |
Q |
| |
|
||||| |||||||||| ||||||| ||||||| || ||||||||| |||||||||||||||||| | | || | ||||||||||||||||||| ||| |
|
|
| T |
51155763 |
gaatgatatgacaaaagctcctataaaagttgccacaaactgtataaactgtcccacctgaaatgaatgaagtgtggacaataaagaacttaaactcttt |
51155664 |
T |
|
| Q |
330 |
tttttaggtagtcgataaaaacaaaaatggtggttattaaaagtagtatgatgtaacgtttcactgataccttctcacccatggcatccttaataagaac |
429 |
Q |
| |
|
|||||||||||| | |||||||||| || |||| | | || ||||||| || || | |||| |||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
51155663 |
tttttaggtagtttaaaaaaacaaaa-tgctggtgagttaagatagtatggtggaatgattcattgataccttctcccccatggcatctttaattagaaa |
51155565 |
T |
|
| Q |
430 |
agtatcacctgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatcttgcctcaaaattgttttaaggtataaccctcta |
529 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51155564 |
tgtatcacctgacatccttccaacaacctctccagtattagtttccttatcaaagaagctcacatcttgcctcaaaattgttttaaggtataaccctcta |
51155465 |
T |
|
| Q |
530 |
attcttgcactctgtctctccccggtgatcatccagcaagttaattctggtacatagcaaacagattttatttaagtttagttcataatgtaccaaacca |
629 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
51155464 |
attcttgcactctgtctctccccggtgatcatccaacaagttagttctggtacatagcaaacagattttat-----tttagttcagaatgtaccaaacca |
51155370 |
T |
|
| Q |
630 |
at-aattagattgtaagaactaactgagaaactaatgcacttacgcaaaaatgac |
683 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
51155369 |
ataaattagattggaagaactaactgagaaactaatgtacttacgcaaaaatgac |
51155315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 39 - 592
Target Start/End: Original strand, 29938132 - 29938681
Alignment:
| Q |
39 |
atattaattttcggcagtgtacatacagttcgaatggaacctattgtctgctctactacacctgctgatttagaataagctgcttgtccagttgatgatg |
138 |
Q |
| |
|
|||||| |||||| |||| | ||||||||||| |||||||| |||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29938132 |
atattatttttcgccagtatgcatacagttcggatggaaccaattgtctgctctactagacttgctgattcagaataagctgcttgtccagttgatgatg |
29938231 |
T |
|
| Q |
139 |
cttttgcaataaccatactcgtcatagaaccagacaagataagaagtggtatactagatagcatgacaacagttagaagccatccttttgtgaatgctat |
238 |
Q |
| |
|
|||||||||||||| ||||||||| || | ||||||| | |||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
29938232 |
cttttgcaataaccttactcgtcacagcagcagacaatacaagaagtggtatactaaatagcatgacaacagttagaagccatcccttagtgaatgctat |
29938331 |
T |
|
| Q |
239 |
gacaaaacctcctatgaaagttgacataaactgtatgaactgtcccacctgaaatcgaaggaggggggacaataaagaacttaaagtctcatttttaggt |
338 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||| ||| |||||| || |
|
|
| T |
29938332 |
gacaaaacctcctatgaaagttgccacaaactgtataaactgtcccacctgaaat-gaaagaagggggacaataaagaacttaaa--ctcttttttatgt |
29938428 |
T |
|
| Q |
339 |
agtcgataaaaacaaaaatggtggttattaaaagtagtatgatgtaacgtttcactgataccttctcacccatggcatccttaataagaacagtatcacc |
438 |
Q |
| |
|
|||||| ||||||||||| || | ||| | | |||||||| || | |||| |||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
29938429 |
agtcgagaaaaacaaaaa-ggcaatgatttcagattgtatgatggaatggttcattgataccttctcccccatggcatctttaataagaacagtgtcacc |
29938527 |
T |
|
| Q |
439 |
tgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatcttgcctcaaaattgttttaaggtataaccctctaattcttgca |
538 |
Q |
| |
|
|| ||| ||||||||||||||||| || |||||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29938528 |
tgccatccttccaacaacctctccagtgttagtttctttatcaaaaaagctcacatcttgcctcaaaattgttttaaggtataagcctctaattcttgca |
29938627 |
T |
|
| Q |
539 |
ctctgtctctccccggtgatcatccagcaagttaattctggtacatagcaaaca |
592 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
29938628 |
ctctgtctctccccagtgatcatccagcaagttacctctagtacatagcaaaca |
29938681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 396 - 585
Target Start/End: Complemental strand, 51198113 - 51197924
Alignment:
| Q |
396 |
ataccttctcacccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatc |
495 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
51198113 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttccaacaacctctccagtattagtttccttatcaaagaaactcacatc |
51198014 |
T |
|
| Q |
496 |
ttgcctcaaaattgttttaaggtataaccctctaattcttgcactctgtctctccccggtgatcatccagcaagttaattctggtacata |
585 |
Q |
| |
|
||||||||||||||||| |||||||| | ||| ||||||||| ||||||||| ||||| |||||||||||||| || |||| |||||| |
|
|
| T |
51198013 |
ttgcctcaaaattgtttggaggtataagcttctgattcttgcagcctgtctctcaccggtaatcatccagcaagtcaactctgatacata |
51197924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 60 - 294
Target Start/End: Complemental strand, 51198737 - 51198503
Alignment:
| Q |
60 |
catacagttcgaatggaacctattgtctgctctactacacctgctgatttagaataagctgcttgtccagttgatgatgcttttgcaataaccatactcg |
159 |
Q |
| |
|
|||||||||| ||| || ||||||||||| ||||| ||| ||| | |||||||||||||||||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
51198737 |
catacagttctaatagagcctattgtctgttctacaacagttgcagctttagaataagctgcttgtccactggatgatgcttttgaaataaccatactca |
51198638 |
T |
|
| Q |
160 |
tcatagaaccagacaagataagaagtggtatactagatagcatgacaacagttagaagccatccttttgtgaatgctatgacaaaacctcctatgaaagt |
259 |
Q |
| |
|
|||| | ||| ||||||| ||||||||| |||| ||| | |||||||||||||| ||||||||| || |||||||||| ||||||||||| | |||||| |
|
|
| T |
51198637 |
tcattgcacccgacaagacaagaagtggaatacaagacatcatgacaacagttaaaagccatcccttgatgaatgctatcacaaaacctccaaagaaagt |
51198538 |
T |
|
| Q |
260 |
tgacataaactgtatgaactgtcccacctgaaatc |
294 |
Q |
| |
|
| ||| |||||||| ||||||||||||||||||| |
|
|
| T |
51198537 |
agccattaactgtataaactgtcccacctgaaatc |
51198503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 396 - 569
Target Start/End: Complemental strand, 51211639 - 51211466
Alignment:
| Q |
396 |
ataccttctcacccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatc |
495 |
Q |
| |
|
||||||| || |||||||| || | ||||||||| ||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||| | ||| |
|
|
| T |
51211639 |
ataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactgatatc |
51211540 |
T |
|
| Q |
496 |
ttgcctcaaaattgttttaaggtataaccctctaattcttgcactctgtctctccccggtgatcatccagcaag |
569 |
Q |
| |
|
|||||| ||||||| ||| |||||||| | || ||||||||| |||||||||||| ||||||||||| |||| |
|
|
| T |
51211539 |
ttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcccctgtgatcatccaacaag |
51211466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 396 - 538
Target Start/End: Original strand, 38527181 - 38527323
Alignment:
| Q |
396 |
ataccttctcacccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatc |
495 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||| ||||||||||| ||||| ||||| || || ||||| |||||||||||| | ||||| |
|
|
| T |
38527181 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaacatc |
38527280 |
T |
|
| Q |
496 |
ttgcctcaaaattgttttaaggtataaccctctaattcttgca |
538 |
Q |
| |
|
||| || || |||||||| | || || ||||| ||||||||| |
|
|
| T |
38527281 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgca |
38527323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 396 - 538
Target Start/End: Original strand, 38568482 - 38568624
Alignment:
| Q |
396 |
ataccttctcacccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatc |
495 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||| || | ||| ||||| || || ||||| |||||||||||| | ||||| |
|
|
| T |
38568482 |
ataccttctcacccatggcatcttgaataagaacagtatcacctgacattctccctataacttctcctgtgtttgtttctttatcaaagaaagtaacatc |
38568581 |
T |
|
| Q |
496 |
ttgcctcaaaattgttttaaggtataaccctctaattcttgca |
538 |
Q |
| |
|
||| || || |||||||| | || || ||||| ||||||||| |
|
|
| T |
38568582 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgca |
38568624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 396 - 564
Target Start/End: Original strand, 49738535 - 49738703
Alignment:
| Q |
396 |
ataccttctcacccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatc |
495 |
Q |
| |
|
|||||||||| ||||||||||| | ||||||||| || |||||||| ||||||||||||||||| | | || |||||| | |||||||| || | ||| |
|
|
| T |
49738535 |
ataccttctctcccatggcatcttgaataagaactgtgtcacctgatattcttccaacaacctcaacactgtttgtttccctgtcaaagaagcttatatc |
49738634 |
T |
|
| Q |
496 |
ttgcctcaaaattgttttaaggtataaccctctaattcttgcactctgtctctccccggtgatcatcca |
564 |
Q |
| |
|
|||||| ||||||| ||| |||||||| | | ||||||||| |||||||||||||||| |||||| |
|
|
| T |
49738635 |
ttgccttaaaattgctttgaggtataaggcccgtattcttgcagcttgtctctccccggtgaccatcca |
49738703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 397 - 522
Target Start/End: Complemental strand, 36284848 - 36284720
Alignment:
| Q |
397 |
taccttctcacccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagt---ttccttatcaaagaaactcaca |
493 |
Q |
| |
|
||||||||||||||| ||||| | |||||||| || |||| |||||| |||||||||||||| || |||||||| |||| | |||||||| ||| | |
|
|
| T |
36284848 |
taccttctcacccattgcatcttgaataagaattgtgtcacttgacatccttccaacaacctcgccagtattagtttcttccatgtcaaagaagctcgta |
36284749 |
T |
|
| Q |
494 |
tcttgcctcaaaattgttttaaggtataa |
522 |
Q |
| |
|
|||||||||||||||| | | |||||||| |
|
|
| T |
36284748 |
tcttgcctcaaaattgctctgaggtataa |
36284720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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