View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2856_high_11 (Length: 249)
Name: NF2856_high_11
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856_high_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 30237917 - 30238153
Alignment:
| Q |
13 |
atcaattaagggcagcacattacctctgatgcagcgacatcagtgaaactaaatttctcaaatatttttctaaattcttcatccatgccttcgtataggt |
112 |
Q |
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| T |
30237917 |
atcaattaagggcagcacattacctctgatgcagcgacatcagtgaaactaaatttctcaaatatttttctaaattcttcatccatgccttcgtataggt |
30238016 |
T |
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| Q |
113 |
ctaccttctctggtacatactcaatttcaacttgttcaaaaacctaaaaattaataagcnnnnnnnttattacacaagtatgcttagtaaatcaaaatgc |
212 |
Q |
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| T |
30238017 |
ctaccttctctggtacatactcaatttcaacttgttcaaaaacctaaaaatgaataagcaaaaaaattattacacaagtatgcttagtaaatcaaaatgc |
30238116 |
T |
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| Q |
213 |
tagcagagatatttcaatttcaccaattatgaaaacc |
249 |
Q |
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| T |
30238117 |
tagcagagatatttcaatttcaccaattatgaaaacc |
30238153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 3578083 - 3577847
Alignment:
| Q |
13 |
atcaattaagggcagcacattacctctgatgcagcgacatcagtgaaactaaatttctcaaatatttttctaaattcttcatccatgccttcgtataggt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3578083 |
atcaattaagggcagcacattacctctgatgcagcgacttcagtgaaactaaatttctcaaatatttttctaaattcttcatccatgccttcgtataggt |
3577984 |
T |
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| Q |
113 |
ctaccttctctggtacatactcaatttcaacttgttcaaaaacctaaaaattaataagcnnnnnnnttattacacaagtatgcttagtaaatcaaaatgc |
212 |
Q |
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| T |
3577983 |
ctaccttctctggtacatactcaatttcaacttgttcaaaaacctaaaaatgaataagcaaaaaaattattacacaagtatgcttagtaaatcaaaatgc |
3577884 |
T |
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| Q |
213 |
tagcagagatatttcaatttcaccaattatgaaaacc |
249 |
Q |
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| T |
3577883 |
tagcagagatatttcaatttcaccaattatgaaaacc |
3577847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 166
Target Start/End: Complemental strand, 35699362 - 35699252
Alignment:
| Q |
56 |
tgaaactaaatttctcaaatatttttctaaattcttcatccatgccttcgtataggtctaccttctctggtacatactcaatttcaacttgttcaaaaac |
155 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||| |||||||||||| ||| | || || ||||||||||||||||||||||| |||| ||| |
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| T |
35699362 |
tgaaactaaatttctcaaagattttcttaaattcttcatccaagccttcgtatagctctgctttttccggtacatactcaatttcaacttgctcaacaac |
35699263 |
T |
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| Q |
156 |
ctaaaaattaa |
166 |
Q |
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| T |
35699262 |
ctaaaatttaa |
35699252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 6378136 - 6378218
Alignment:
| Q |
84 |
aaattcttcatccatgccttcgtataggtctaccttctctggtacatactcaatttcaacttgttcaaaaacctaaaaattaa |
166 |
Q |
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| T |
6378136 |
aaattcttcatccatgcattcatctaggttagccttctctagtacatactcaatttcaacttgtccaacaacccaaaaattaa |
6378218 |
T |
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