View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2856_high_3 (Length: 457)

Name: NF2856_high_3
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2856_high_3
NF2856_high_3
[»] chr1 (6 HSPs)
chr1 (18-449)||(18617334-18617767)
chr1 (400-447)||(40734995-40735042)
chr1 (400-447)||(43356459-43356506)
chr1 (413-451)||(23045211-23045249)
chr1 (402-447)||(13401621-13401666)
chr1 (400-449)||(46082358-46082407)
[»] chr6 (8 HSPs)
chr6 (31-169)||(17159096-17159225)
chr6 (400-447)||(788890-788937)
chr6 (400-447)||(15169955-15170002)
chr6 (400-447)||(15178727-15178774)
chr6 (400-447)||(24623307-24623354)
chr6 (413-451)||(12904320-12904358)
chr6 (413-447)||(23635717-23635751)
chr6 (400-445)||(21029356-21029401)
[»] scaffold0042 (1 HSPs)
scaffold0042 (98-169)||(90499-90571)
[»] chr2 (4 HSPs)
chr2 (400-451)||(19967438-19967489)
chr2 (413-451)||(19159961-19159999)
chr2 (413-447)||(44488013-44488047)
chr2 (403-447)||(25603904-25603948)
[»] chr4 (7 HSPs)
chr4 (401-451)||(50380827-50380877)
chr4 (402-447)||(48159701-48159746)
chr4 (400-448)||(17948126-17948174)
chr4 (416-448)||(37422214-37422246)
chr4 (413-451)||(32923206-32923244)
chr4 (413-451)||(36569193-36569231)
chr4 (400-452)||(21649297-21649349)
[»] chr3 (10 HSPs)
chr3 (400-450)||(9856095-9856145)
chr3 (400-449)||(45334211-45334260)
chr3 (413-449)||(36690034-36690070)
chr3 (400-450)||(4668705-4668755)
chr3 (413-451)||(28965780-28965818)
chr3 (406-447)||(977937-977978)
chr3 (400-449)||(17755143-17755192)
chr3 (400-449)||(19056463-19056512)
chr3 (400-440)||(20624275-20624315)
chr3 (411-447)||(24521672-24521708)
[»] chr8 (3 HSPs)
chr8 (400-451)||(28580964-28581015)
chr8 (411-448)||(41535346-41535383)
chr8 (400-451)||(1135383-1135435)
[»] chr5 (2 HSPs)
chr5 (401-447)||(39963517-39963563)
chr5 (400-440)||(16575312-16575352)
[»] chr7 (1 HSPs)
chr7 (400-440)||(30081904-30081944)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 18617767 - 18617334
Alignment:
Q  18 aaatatgggaaggaactacgacctattagtaaggttccatccatgtctgctactactgtgtgtttttctctaccaattgaggtgcatttgttcactgttg 117  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  18617767 aaatatggaaaagaactacgacctattagtaaggttccatccatgtctgctactactgtgtgcttttctctaccaatggaggtgcatttgttcactgttg 18617668  T
Q  118 gaaaggttgaagatgccatggtgatgatggtgatttcttcttgtaacaaagacacactctctgtttctacaagacaggggtgcatgtttttgtgtgaagt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18617667 gaaaggttgaagatgccatggtgatgatggtgatttcttcttgtaacaaagacacactctctgtttctacaagacaggggtgcatgtttttgtgtgaagt 18617568  T
Q  218 tgttgtgtttatatacacgtacatgcaagaagaatcgtaggtggaatatgtttttgtttattgtttatttctttttcatttaaattaaatagggtaattt 317  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  18617567 tgttgtgtttatatacacatacatgcaagaagaatcgtaggtggaatatgtttt--tttattgtttatttctttttcatttaaattaaatagggtaattt 18617470  T
Q  318 ------nnnnnnnnnnnnntattgattttgatacatccaagtttgtgatatctctgctacagttagctaggaaacnnnnnnnnnnnnngtggtggtcagg 411  Q
                       ||||||||||||||||||||||||||||||||||| || ||||||||||||| |||              |||||||||||    
T  18617469 taaaaataaaaaaaaataatattgattttgatacatccaagtttgtgatatctccgcgacagttagctaggcaactttttttttttt--tggtggtcagg 18617372  T
Q  412 atttgaactccgaaccttacacatattatgcattgttc 449  Q
    ||||||||||||||||||| | |||| |||||||||||    
T  18617371 atttgaactccgaaccttatatatatgatgcattgttc 18617334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 40734995 - 40735042
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcattgt 447  Q
    |||||||||||| ||||||| |||||||||||| || |||||||||||    
T  40734995 gtggtggtcagggtttgaaccccgaaccttacatattttatgcattgt 40735042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 43356506 - 43356459
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcattgt 447  Q
    ||||||||| || |||||||||| ||||||||| ||||||||||||||    
T  43356506 gtggtggtcggggtttgaactccaaaccttacatatattatgcattgt 43356459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 451
Target Start/End: Complemental strand, 23045249 - 23045211
Alignment:
Q  413 tttgaactccgaaccttacacatattatgcattgttcat 451  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  23045249 tttgaactccggaccttacatatattatgcattgttcat 23045211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 13401666 - 13401621
Alignment:
Q  402 ggtggtcaggatttgaactccgaaccttacacatattatgcattgt 447  Q
    ||||||| || ||||||| |||||||||||| ||||||||||||||    
T  13401666 ggtggtcggggtttgaaccccgaaccttacatatattatgcattgt 13401621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 46082407 - 46082358
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcattgttc 449  Q
    |||||||||||  |||||| ||| ||||||||| ||||||||||||||||    
T  46082407 gtggtggtcagtgtttgaattccaaaccttacatatattatgcattgttc 46082358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 17159225 - 17159096
Alignment:
Q  31 aactacgacctattagtaaggttccatccatgtctgctactactgtgtgtttttctctaccaattgaggtgcatttgttcactgttggaaaggttgaaga 130  Q
    ||||||||||||||||||||||| ||||||| | ||||| ||||||||| |||||||||||||||||||| |||||||||||||||  ||||||||||||    
T  17159225 aactacgacctattagtaaggtttcatccatatttgcta-tactgtgtgcttttctctaccaattgaggtacatttgttcactgttcaaaaggttgaaga 17159127  T
Q  131 tgccatggtgatgatggtgatttcttcttgtaacaaaga 169  Q
    ||||||        |||||||||||||||||||||||||    
T  17159126 tgccat--------tggtgatttcttcttgtaacaaaga 17159096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 788937 - 788890
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcattgt 447  Q
    ||||||||| || ||||||||||||||||| || ||||||||||||||    
T  788937 gtggtggtcggggtttgaactccgaaccttgcatatattatgcattgt 788890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 15170002 - 15169955
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcattgt 447  Q
    ||||||||| || ||||||| |||||||||||| ||||||||||||||    
T  15170002 gtggtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15169955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 15178774 - 15178727
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcattgt 447  Q
    ||||||||| || ||||||| |||||||||||| ||||||||||||||    
T  15178774 gtggtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15178727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 24623307 - 24623354
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcattgt 447  Q
    ||||||||| || ||||||| |||||||||||| ||||||||||||||    
T  24623307 gtggtggtcggggtttgaaccccgaaccttacatatattatgcattgt 24623354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 451
Target Start/End: Original strand, 12904320 - 12904358
Alignment:
Q  413 tttgaactccgaaccttacacatattatgcattgttcat 451  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  12904320 tttgaactccgaaccttgcatatattatgcattgttcat 12904358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 447
Target Start/End: Original strand, 23635717 - 23635751
Alignment:
Q  413 tttgaactccgaaccttacacatattatgcattgt 447  Q
    |||||||||||||||||||| ||||||||||||||    
T  23635717 tttgaactccgaaccttacatatattatgcattgt 23635751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 21029356 - 21029401
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcatt 445  Q
    ||||||||||| |||||||| ||||||||| || ||||||||||||    
T  21029356 gtggtggtcagaatttgaaccccgaaccttgcatatattatgcatt 21029401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 90571 - 90499
Alignment:
Q  98 ggtgcatttgttcactgttggaaaggttgaagatgcca-tggtgatgatggtgatttcttcttgtaacaaaga 169  Q
    |||||||||| ||| ||||||||||||||||||||||| |||||||  ||||||||||||| |||||||||||    
T  90571 ggtgcatttgatcattgttggaaaggttgaagatgccattggtgattttggtgatttcttcctgtaacaaaga 90499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 400 - 451
Target Start/End: Complemental strand, 19967489 - 19967438
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcattgttcat 451  Q
    |||||||||  | ||||||||||||||||| |||||||||||||||||||||    
T  19967489 gtggtggtcgaggtttgaactccgaaccttgcacatattatgcattgttcat 19967438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 451
Target Start/End: Complemental strand, 19159999 - 19159961
Alignment:
Q  413 tttgaactccgaaccttacacatattatgcattgttcat 451  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  19159999 tttgaactccgaaccttgcatatattatgcattgttcat 19159961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 447
Target Start/End: Original strand, 44488013 - 44488047
Alignment:
Q  413 tttgaactccgaaccttacacatattatgcattgt 447  Q
    |||||||||||||||||||| ||||||||||||||    
T  44488013 tttgaactccgaaccttacatatattatgcattgt 44488047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 25603904 - 25603948
Alignment:
Q  403 gtggtcaggatttgaactccgaaccttacacatattatgcattgt 447  Q
    ||||||||||||||||| || ||||||| | ||||||||||||||    
T  25603904 gtggtcaggatttgaaccccaaaccttatatatattatgcattgt 25603948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 50380827 - 50380877
Alignment:
Q  401 tggtggtcaggatttgaactccgaaccttacacatattatgcattgttcat 451  Q
    ||||||||  ||||||||||||| |||||||| ||||||||||||||||||    
T  50380827 tggtggtcgagatttgaactccggaccttacatatattatgcattgttcat 50380877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 48159746 - 48159701
Alignment:
Q  402 ggtggtcaggatttgaactccgaaccttacacatattatgcattgt 447  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  48159746 ggtggtcgggatttgaacttcgaaccttacatatattatgcattgt 48159701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 17948126 - 17948174
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcattgtt 448  Q
    ||||||||| || |||||||||||||||||||| || ||||||||||||    
T  17948126 gtggtggtcggggtttgaactccgaaccttacatattttatgcattgtt 17948174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 448
Target Start/End: Complemental strand, 37422246 - 37422214
Alignment:
Q  416 gaactccgaaccttacacatattatgcattgtt 448  Q
    |||||||||||||||||||||||||||||||||    
T  37422246 gaactccgaaccttacacatattatgcattgtt 37422214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 451
Target Start/End: Original strand, 32923206 - 32923244
Alignment:
Q  413 tttgaactccgaaccttacacatattatgcattgttcat 451  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  32923206 tttgaaccccgaaccttacatatattatgcattgttcat 32923244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 451
Target Start/End: Complemental strand, 36569231 - 36569193
Alignment:
Q  413 tttgaactccgaaccttacacatattatgcattgttcat 451  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  36569231 tttgaactccgaaccttacatatattatgcatttttcat 36569193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 452
Target Start/End: Complemental strand, 21649349 - 21649297
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcattgttcatc 452  Q
    ||||||||| |||||||||  |||| ||||||| |||||||||||||| ||||    
T  21649349 gtggtggtcgggatttgaagcccgatccttacatatattatgcattgtccatc 21649297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 450
Target Start/End: Original strand, 9856095 - 9856145
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcattgttca 450  Q
    ||||||||||||||| ||||||||||||||  | |||||||||||||||||    
T  9856095 gtggtggtcaggattcgaactccgaaccttgaatatattatgcattgttca 9856145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 45334260 - 45334211
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcattgttc 449  Q
    ||||||||| |||||||||| ||||||||| || ||||||||||||||||    
T  45334260 gtggtggtcgggatttgaaccccgaaccttgcatatattatgcattgttc 45334211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 449
Target Start/End: Complemental strand, 36690070 - 36690034
Alignment:
Q  413 tttgaactccgaaccttacacatattatgcattgttc 449  Q
    |||||||||||||||||||| ||||||||||||||||    
T  36690070 tttgaactccgaaccttacatatattatgcattgttc 36690034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 450
Target Start/End: Complemental strand, 4668755 - 4668705
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcattgttca 450  Q
    ||||| |||||| |||||||||| ||| ||||| |||||||||||||||||    
T  4668755 gtggtcgtcagggtttgaactccaaactttacatatattatgcattgttca 4668705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 451
Target Start/End: Original strand, 28965780 - 28965818
Alignment:
Q  413 tttgaactccgaaccttacacatattatgcattgttcat 451  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  28965780 tttgaaccccgaaccttacatatattatgcattgttcat 28965818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 977937 - 977978
Alignment:
Q  406 gtcaggatttgaactccgaaccttacacatattatgcattgt 447  Q
    |||||||||||||||||| ||||| || ||||||||||||||    
T  977937 gtcaggatttgaactccggaccttgcatatattatgcattgt 977978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 17755192 - 17755143
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcattgttc 449  Q
    ||||||||| | |||||||| |||||||||||| |||||||| |||||||    
T  17755192 gtggtggtcggaatttgaaccccgaaccttacatatattatgtattgttc 17755143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 19056512 - 19056463
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcattgttc 449  Q
    ||||||||| | |||||||| |||||||||||| |||||||| |||||||    
T  19056512 gtggtggtcggaatttgaaccccgaaccttacatatattatgtattgttc 19056463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 20624315 - 20624275
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattat 440  Q
    ||||||||||||||||||||| || |||||||| |||||||    
T  20624315 gtggtggtcaggatttgaacttcggaccttacatatattat 20624275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 24521708 - 24521672
Alignment:
Q  411 gatttgaactccgaaccttacacatattatgcattgt 447  Q
    |||||||||||||||||||||| || |||||||||||    
T  24521708 gatttgaactccgaaccttacatattttatgcattgt 24521672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 451
Target Start/End: Complemental strand, 28581015 - 28580964
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattatgcattgttcat 451  Q
    ||||||||| |||||||||| |||||||||||| || ||||||||| |||||    
T  28581015 gtggtggtcgggatttgaaccccgaaccttacatattttatgcattattcat 28580964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Complemental strand, 41535383 - 41535346
Alignment:
Q  411 gatttgaactccgaaccttacacatattatgcattgtt 448  Q
    |||||||||||||||||||| | |||||||||||||||    
T  41535383 gatttgaactccgaaccttatatatattatgcattgtt 41535346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 451
Target Start/End: Original strand, 1135383 - 1135435
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacat-attatgcattgttcat 451  Q
    ||||||||| |||||||||| || ||||||||| || ||||||||||||||||    
T  1135383 gtggtggtctggatttgaaccccaaaccttacatattattatgcattgttcat 1135435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 447
Target Start/End: Complemental strand, 39963563 - 39963517
Alignment:
Q  401 tggtggtcaggatttgaactccgaaccttacacatattatgcattgt 447  Q
    ||||||||||  ||||||| |||||||||||| ||||||||||||||    
T  39963563 tggtggtcagagtttgaaccccgaaccttacatatattatgcattgt 39963517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 440
Target Start/End: Original strand, 16575312 - 16575352
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattat 440  Q
    |||||||||||| ||||||||||| |||||||| |||||||    
T  16575312 gtggtggtcagggtttgaactccggaccttacatatattat 16575352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 30081944 - 30081904
Alignment:
Q  400 gtggtggtcaggatttgaactccgaaccttacacatattat 440  Q
    |||||||||||||||||||| | |||||||||| |||||||    
T  30081944 gtggtggtcaggatttgaaccctgaaccttacatatattat 30081904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University