View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2856_high_4 (Length: 420)
Name: NF2856_high_4
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 24 - 404
Target Start/End: Original strand, 10513586 - 10513966
Alignment:
| Q |
24 |
ggagcttccattgattgttgtggatgtattcattaacagtagatttgaggagaggcctagtagcttcgggaatgttgagaagatccgcaagagattggcc |
123 |
Q |
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| T |
10513586 |
ggagcttccattgattgttgtggatgtattcattaacaatagattttaggagaggtctagtagcttcgggaatgttgagaagattcgcaagagattggcc |
10513685 |
T |
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| Q |
124 |
aaaccaagggtcattccagaagctaatatccttaccatcgcctaacaaccaaatggagttagattgaatgcaagagtactcttcttttatactgctccaa |
223 |
Q |
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| T |
10513686 |
aaaccaagggtcattccagaagctaatatccttaccatcgcctaacaaccaaatggagttagattgaatgcaagagtactcttcttttatattgctccat |
10513785 |
T |
|
| Q |
224 |
aaagaagagaagatgtgatgctttatagatttgttgtttctcaagactctatctttcaaaagagctgcacaaggtttctgagagttgatcaaattccagc |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
10513786 |
aaagaagagaagatgtgatgctttatagatttgttgtttctcaagactctatccttcaaaagagttgcccaaggtttctgagagttgatcaaattccagc |
10513885 |
T |
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| Q |
324 |
aaagcttcaagttggtagcttgattcaaacttatgaaggatcttaagtttaaaccaccctgcttccaatgtctacacacct |
404 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10513886 |
aaagcttcaagttggtagcttgattcaaacttatgagggatcttaagtttaaaccaccctgcttccaatgtctacacacct |
10513966 |
T |
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