View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2856_high_7 (Length: 376)
Name: NF2856_high_7
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 360
Target Start/End: Complemental strand, 10839156 - 10838803
Alignment:
| Q |
13 |
aaaatattaatgtgcattttttgtgcatcctctnnnnnnntgattattgtgcatgttacttttactttcnnnnnnnnatcaagttgtccatgttactgaa |
112 |
Q |
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| T |
10839156 |
aaaatattaatgtgcattttttgtgcatcctctaaaaaaatgattattgtgcatgctacttttactttcttttttttatcaagttgtccatgttactgaa |
10839057 |
T |
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| Q |
113 |
ataaaattaattagcaatatgatgaagtgtgcatcattcattaatatttatttgctcaatatggctacgagctaaaagtaagtgcttgtattgtaaatta |
212 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10839056 |
ataaaactaattagcaatatgatgaagtgtgcatcattcattaatatttatttgttcaatatggctacgagctaaaactaagtgcttgtattgtaaatta |
10838957 |
T |
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| Q |
213 |
aaatcttga-ttttagtcatgcttaaacattgtaagtaactggtaagggtaaacgatcttagtatcttattaccttcagagttcagacagagagacaaac |
311 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10838956 |
aaatcttgatttttagtcatgcttaaacattgtaagtaactggtaagggtaaacgatcttagtatcttattaccttcagagttcagacagagagacaaac |
10838857 |
T |
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| Q |
312 |
caataacaa-----ttaatttgttattcttttttacagtatttaatttgttaat |
360 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10838856 |
caataacaaggactttaatttgttattcttttttacagtatttaatttgttaat |
10838803 |
T |
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