View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2856_low_11 (Length: 328)
Name: NF2856_low_11
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 5 - 314
Target Start/End: Complemental strand, 3577765 - 3577458
Alignment:
| Q |
5 |
tcagtataatattctactaaaacgcgcttaattaaagttcaaacaccctaatttcactacaatattgattcaacaaacacaaacattcagaattaaattt |
104 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3577765 |
tcagtataatattc-actaaaacgcgcttaattaaagttcaaacaccctaatttcactaaaatattgattcaacaaacacaaacattcagaattaaattt |
3577667 |
T |
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| Q |
105 |
gaatagcacctatcaatttaatttaaaatcaatttcctccaatctatgaacaacgaaaatcaaatgaatcaaaggttatgcttgttggtaccgatgtcat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3577666 |
gaatagcacctatcaatttaatttaaaatcaatttcctccaatctatgaacaacgaaaatcaaatgaatcaaaggttatgcttgttggtaccgatgtcat |
3577567 |
T |
|
| Q |
205 |
agctgagtcttcctttgcctttcgcacgctccggttcttagggttgtcgatggaagcaaaccactagtgagcgtattgtcggagtgatggcaaaagggga |
304 |
Q |
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|||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3577566 |
ggctgagtcttcctttgcctttcacacgctccggtt-ttcgggttgtcgatggaagcaaaccactagtgagcgtattgtcggagtgatggcaaaagagga |
3577468 |
T |
|
| Q |
305 |
cctagcctct |
314 |
Q |
| |
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|||||||||| |
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| T |
3577467 |
cctagcctct |
3577458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 5 - 314
Target Start/End: Original strand, 30238233 - 30238540
Alignment:
| Q |
5 |
tcagtataatattctactaaaacgcgcttaattaaagttcaaacaccctaatttcactacaatattgattcaacaaacacaaacattcagaattaaattt |
104 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30238233 |
tcagtataatattc-actaaaacgcgcttaattaaagttcaaacaccctaatttcactaaaatattgattcaacaaacacaaacattcagaattaaattt |
30238331 |
T |
|
| Q |
105 |
gaatagcacctatcaatttaatttaaaatcaatttcctccaatctatgaacaacgaaaatcaaatgaatcaaaggttatgcttgttggtaccgatgtcat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30238332 |
gaatagcacctatcaatttaatttaaaatcaatttcctccaatctatgaacaacgaaaatcaaatgaatcaaaggttatgcttgttggtaccaatgtcat |
30238431 |
T |
|
| Q |
205 |
agctgagtcttcctttgcctttcgcacgctccggttcttagggttgtcgatggaagcaaaccactagtgagcgtattgtcggagtgatggcaaaagggga |
304 |
Q |
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| |||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30238432 |
ggttgagtcttcctttgcctttcacacgctccggtt-ttcgggttgtcgatggaagcaaaccactagtgagcgtattgtcggagtgatggcaaaagagga |
30238530 |
T |
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| Q |
305 |
cctagcctct |
314 |
Q |
| |
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|||||||||| |
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| T |
30238531 |
cctagcctct |
30238540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 25857000 - 25857088
Alignment:
| Q |
209 |
gagtcttcctttgcctttcgcacgctccggttcttagggttgtcgatggaagcaaaccactagtgagc-gtattgtcggagtgatggcaaa |
298 |
Q |
| |
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||||||||||||||||||| || ||||||| |||||| || ||||||| ||||||||||| ||||| | |||| | ||||||||||||| |
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| T |
25857000 |
gagtcttcctttgcctttcacatgctccggaacttaggattttcgatgg--gcaaaccactaatgagcagaattgccagagtgatggcaaa |
25857088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 24040120 - 24040208
Alignment:
| Q |
186 |
ttgttggtaccgatgtcatagctgagtcttcctttgcctttcgcacgctccggttcttagggttgtcgatggaagcaaaccactagtgag |
275 |
Q |
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|||||| ||| |||||||| ||||| |||||||||||||||| || ||||| |||||||| || | ||| || ||||||||||| |||| |
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| T |
24040120 |
ttgttgatactgatgtcatggctgaatcttcctttgcctttcacatgctccatttcttaggatttttgat-gaggcaaaccactaatgag |
24040208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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