View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2856_low_14 (Length: 249)
Name: NF2856_low_14
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 33300458 - 33300684
Alignment:
| Q |
16 |
atttttgtgacaggtttcaatatcttttgcaaagatcctattacaagtgacaaggccaagaactgctattttggggaagattcctgggacatctgtctat |
115 |
Q |
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| T |
33300458 |
atttttgtgacaggtttcaatatcttttgcaaagatcctattacaagtgacaaggccaagaactgctattttggggaagattcctgggacatctgtctat |
33300557 |
T |
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| Q |
116 |
agaaacatccaacaatacactgaagctagtaaggttccaggtgtaatgattgtaagagttgattctgctatatatttttccaactccaactatgttaaag |
215 |
Q |
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| T |
33300558 |
agaaacatccaacaatacactgaagctagtaaggttccaggtgtaatgattgtaagagttgattctgctatatatttttccaactccaactatgttaaag |
33300657 |
T |
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| Q |
216 |
aaaggtaaataatatcttcctcctttg |
242 |
Q |
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| T |
33300658 |
aaaggtaaataatatcttcctcctttg |
33300684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 25721573 - 25721776
Alignment:
| Q |
20 |
ttgtgacaggtttcaatatcttttgcaaagatcctattacaagtgacaaggccaagaactgctattttggggaagattcctgggacatctgtctatagaa |
119 |
Q |
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| T |
25721573 |
ttgtggcaggtttctatatcctttgcaaagatcctattgcaagtcacaaggccccgaacggctattctagggaagatccctaggacaactgtttatagaa |
25721672 |
T |
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| Q |
120 |
acatccaacaatacactgaagctagtaaggttccaggtgtaatgattgtaagagttgattctgctatatatttttccaactccaactatgttaaagaaag |
219 |
Q |
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| T |
25721673 |
acatccagcaatatccagaagccacaagggttcccggtgtattgattataagagttgattctgcaatatatttttctaactccaattatgttaaagaaag |
25721772 |
T |
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| Q |
220 |
gtaa |
223 |
Q |
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|||| |
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| T |
25721773 |
gtaa |
25721776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 1495430 - 1495522
Alignment:
| Q |
33 |
caatatcttttgcaaagatcctattacaagtgacaaggccaagaactgctattttggggaagattcctgggacatctgtctatagaaacatcc |
125 |
Q |
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| T |
1495430 |
caatatcttttgccaaaattcttttacaagtgacaaggccaaagactgcagtactagggaagcttccagggacaactgtttataggaacatcc |
1495522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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