View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2856_low_6 (Length: 402)
Name: NF2856_low_6
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2856_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 12776912 - 12777295
Alignment:
| Q |
1 |
tatcctatgtgtaacagaaatacaaacaatgctttaaaattgtagtaggtagtagttagttactttaggcaatctatctaaattaactattaatctttat |
100 |
Q |
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| T |
12776912 |
tatcctatgtgtaacataaatacaaacaatgctataaaattgtagt---tagtagttagttactttaggcaatctatctaaattaactgttaatcttaat |
12777008 |
T |
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| Q |
101 |
ttgtgatatttatttacgaacactcattaacatttcccttatttatttattaatgcagaagagacagtttcatcacacacagggctttttgtgatgcact |
200 |
Q |
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|||||||||||||||| | |||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12777009 |
ttgtgatatttatttagggacactcgttaacattttccttatttatttatcaatgcagaagagacagtttcatcacacacagggctttttgtgatgcact |
12777108 |
T |
|
| Q |
201 |
tgctcaagaaagttcaagacaaccacatccaaacctaatcaccaacacttccattaataactcccaactatttcgaaatattagtaacaacaacaataac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12777109 |
tgctcaagaaagttcaagacaaccacatccaaacctaatcaccaacacttccattaataactcccaactatttcgaaatattagtaacaacaacaataac |
12777208 |
T |
|
| Q |
301 |
atgtccttagccttgtctcaaattcctcaacaacatatctcttcctttcatggccaaaacgacaacaatcaaactagtgaaatcttg |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12777209 |
atgtccttagccttgtctcaaattcctcaacaacatatctcttccattcatggccaaaacgacaacaatcaaactagtgaaatcttg |
12777295 |
T |
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