View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2856_low_9 (Length: 362)

Name: NF2856_low_9
Description: NF2856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2856_low_9
NF2856_low_9
[»] chr8 (1 HSPs)
chr8 (12-313)||(6970385-6970688)
[»] chr5 (2 HSPs)
chr5 (247-313)||(14487612-14487678)
chr5 (251-318)||(7988894-7988961)
[»] chr4 (1 HSPs)
chr4 (263-311)||(50528570-50528618)
[»] chr6 (1 HSPs)
chr6 (249-330)||(30668162-30668246)
[»] chr7 (2 HSPs)
chr7 (252-330)||(37449493-37449572)
chr7 (257-330)||(45011646-45011720)
[»] chr2 (2 HSPs)
chr2 (248-311)||(41596194-41596257)
chr2 (268-312)||(16538734-16538778)
[»] chr3 (6 HSPs)
chr3 (263-313)||(50724418-50724468)
chr3 (263-313)||(50788380-50788430)
chr3 (248-289)||(8493304-8493345)
chr3 (249-329)||(31274306-31274387)
chr3 (263-312)||(48558738-48558787)
chr3 (247-330)||(36331704-36331788)
[»] chr1 (2 HSPs)
chr1 (253-330)||(18923869-18923947)
chr1 (248-295)||(3797924-3797972)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 6970385 - 6970688
Alignment:
Q  12 atgaaccctcagtactctatatctcatcgaannnnnnngggtgcggttttgagagaataatatgtatacacatgcaccatgtacacttcttagtgagagg 111  Q
    |||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6970385 atgaaccctcagtactctatatctcatcgaatttttttgggtgcgggtttgagagaataatatgtatacacatgcaccatgtacacttcttagtgagagg 6970484  T
Q  112 ttcttattcattttatactgaaaaataaataccataaag-aacaccatgaaaaacagnnnnnnnnngttcttctatatacta----catgcatgcatgcc 206  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||             ||||||||||||    ||||||||||||||    
T  6970485 ttcttattcattttatactgaaaaataaataccataaagaaacaccatgaaaaacagaaaataaag----ttctatatactacatgcatgcatgcatgcc 6970580  T
Q  207 tcccttcatgcatacatacagtttatataata-nnnnnnncgtcaagtagtctaatagctataattcactttttaaggtgaatacgtgggatattcgagg 305  Q
    ||||||||||||||||||  ||||||||||||        | ||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||    
T  6970581 tcccttcatgcatacatattgtttatataatatattttttcatcaagtagtctaatagctataattcactttttaagataaatatgtgggatattcgagg 6970680  T
Q  306 ttcgaacc 313  Q
    ||||||||    
T  6970681 ttcgaacc 6970688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 14487678 - 14487612
Alignment:
Q  247 gtcaagtagtctaatagctataattcactttttaaggtgaatacgtgggatattcgaggttcgaacc 313  Q
    ||||||||||||||| |||| ||||||| || ||||||||||| ||||||||| |||||||||||||    
T  14487678 gtcaagtagtctaatggctagaattcaccttataaggtgaataagtgggatatccgaggttcgaacc 14487612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 318
Target Start/End: Complemental strand, 7988961 - 7988894
Alignment:
Q  251 agtagtctaatagctataattcactttttaaggtgaatacgtgggatattcgaggttcgaacctgacc 318  Q
    ||||| ||||| |||| |||||||||| ||| ||||||| ||||||| | ||||||||||||| ||||    
T  7988961 agtagcctaatggctaaaattcactttataaagtgaataagtgggatgtccgaggttcgaacccgacc 7988894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 50528570 - 50528618
Alignment:
Q  263 gctataattcactttttaaggtgaatacgtgggatattcgaggttcgaa 311  Q
    |||||||||||||||||||||||||||  |||||| |||||||||||||    
T  50528570 gctataattcactttttaaggtgaataaatgggattttcgaggttcgaa 50528618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 30668162 - 30668246
Alignment:
Q  249 caagtagtctaatagctataattcac--tttttaaggtgaatacgtgggatattcgaggttcgaac-ctgacctctgcatataat 330  Q
    ||||||||||| |  |||||||||||  ||||||||||||||| ||||| | |||| ||||||||| |||||| |||||||||||    
T  30668162 caagtagtctagtgactataattcacattttttaaggtgaataagtggggtgttcgtggttcgaactctgacccctgcatataat 30668246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 330
Target Start/End: Original strand, 37449493 - 37449572
Alignment:
Q  252 gtagtctaatagctataattcactttttaaggtgaatacgtgggatattcgaggttcgaac-ctgacctctgcatataat 330  Q
    |||||||| | ||||||||||||||||||| ||||||| ||||||| | | |||||| ||| | |||| |||||||||||    
T  37449493 gtagtctagtggctataattcactttttaaagtgaataagtgggatgtccaaggttcaaactccgacccctgcatataat 37449572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 45011646 - 45011720
Alignment:
Q  257 ctaatagctataattcactttttaaggtgaatacgtgggatattcgaggttcgaa-cctgacctctgcatataat 330  Q
    ||||| |||| ||||||| || ||||||||||| ||||| | | ||||||||||| |||| ||||||||||||||    
T  45011646 ctaatggctagaattcaccttataaggtgaataagtggggtctccgaggttcgaaccctggcctctgcatataat 45011720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 41596194 - 41596257
Alignment:
Q  248 tcaagtagtctaatagctataattcactttttaaggtgaatacgtgggatattcgaggttcgaa 311  Q
    ||||||||||||||  |||||||||||||||||| || |||| ||||| ||| |||| ||||||    
T  41596194 tcaagtagtctaatgactataattcactttttaaagtaaataagtggggtatccgagattcgaa 41596257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 16538734 - 16538778
Alignment:
Q  268 aattcactttttaaggtgaatacgtgggatattcgaggttcgaac 312  Q
    |||||| |||||||| |||||| |||||||||| |||||||||||    
T  16538734 aattcattttttaagatgaataagtgggatatttgaggttcgaac 16538778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 50724468 - 50724418
Alignment:
Q  263 gctataattcactttttaaggtgaatacgtgggatattcgaggttcgaacc 313  Q
    |||| |||||||||||||||||||||| ||||| | | |||||||||||||    
T  50724468 gctagaattcactttttaaggtgaataagtggggtgtccgaggttcgaacc 50724418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 50788380 - 50788430
Alignment:
Q  263 gctataattcactttttaaggtgaatacgtgggatattcgaggttcgaacc 313  Q
    |||| |||||||||||||||||||||| ||||| | | |||||||||||||    
T  50788380 gctagaattcactttttaaggtgaataagtggggtgtccgaggttcgaacc 50788430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 8493345 - 8493304
Alignment:
Q  248 tcaagtagtctaatagctataattcactttttaaggtgaata 289  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||    
T  8493345 tcaagtagtttaatagctagaattcaccttttaaggtgaata 8493304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 31274306 - 31274387
Alignment:
Q  249 caagtagtctaatagctataattcactttttaaggtgaatacgtgggatattcgaggttcgaacct-gacctctgcatataa 329  Q
    |||||||||||||  ||||||||||  ||||||||||||||  |||||| | | |||||| ||||| |||| ||||||||||    
T  31274306 caagtagtctaatgactataattcatcttttaaggtgaataaatgggatgtacaaggttcaaacctcgacccctgcatataa 31274387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 48558787 - 48558738
Alignment:
Q  263 gctataattcactttttaaggtgaatacgtgggatattcgaggttcgaac 312  Q
    |||||||||||| || ||| ||||||| ||||||| ||||||||||||||    
T  48558787 gctataattcaccttataaagtgaataagtgggatgttcgaggttcgaac 48558738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 36331704 - 36331788
Alignment:
Q  247 gtcaagtagtctaatagctataattcactttttaaggtgaatacgtgggatattcgaggttcgaa-cctgacctctgcatataat 330  Q
    |||| |||||||| | |||| |||||||||||||| ||||||| ||||| | | || |||||||| || |||| |||||||||||    
T  36331704 gtcaggtagtctagtggctagaattcactttttaaagtgaataagtggggtgtccggggttcgaaccccgacccctgcatataat 36331788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 18923869 - 18923947
Alignment:
Q  253 tagtctaatagctataattcactttttaaggtgaatacgtgggatattcgaggttcgaa-cctgacctctgcatataat 330  Q
    |||| |||| |||| ||||||| || ||||||||||||||||| | | ||||||||||| ||||| | |||||||||||    
T  18923869 tagtttaatggctagaattcaccttataaggtgaatacgtggggtgtccgaggttcgaaccctgaaccctgcatataat 18923947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 3797972 - 3797924
Alignment:
Q  248 tcaagtagtctaatagctataattca-ctttttaaggtgaatacgtggg 295  Q
    ||||||||| |||| ||||||||||| |||||||||||||||| |||||    
T  3797972 tcaagtagtttaatggctataattcacctttttaaggtgaataagtggg 3797924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University