View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2857_high_3 (Length: 386)
Name: NF2857_high_3
Description: NF2857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2857_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 47334071 - 47333908
Alignment:
| Q |
16 |
atgaaaatagatactaaacctgtgacgaatgaaaaaattgatgtgatnnnnnnntgatgaaaagttggctgctttcactgcagaccaacctcttgtctgg |
115 |
Q |
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| T |
47334071 |
atgaaaatagatactaaacctgtgacgaatgaaaaaattgatgtgataaaaaaatgatgaaaagttggctgctttcactgcagaccaacctcttgtctgg |
47333972 |
T |
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| Q |
116 |
tgggacgtttcattttatttttgtcgcaattcttaacactattttataggaatcccttttaagaat |
181 |
Q |
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| T |
47333971 |
tgggacgtttcattttatttttgtcacaattc-taacatta-tttataggaatcccttttaagaat |
47333908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 207 - 358
Target Start/End: Complemental strand, 47333817 - 47333668
Alignment:
| Q |
207 |
ttctaatctcaattacagaagaatacaaatttgtgactaaattaacnnnnnnnattacattataattataataaaaatcgtaagtacaccaatatcatga |
306 |
Q |
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| T |
47333817 |
ttctaatctcaattacagaagaatacaaatttgtgactaaattaacttttt---ttttattacact-ataataaaaatagtaagtacaccaatatcatga |
47333722 |
T |
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| Q |
307 |
ttgtcgtgattgcagtataaaagaaaaatatg--attcattgaattgaatatcc |
358 |
Q |
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| T |
47333721 |
ttgtcgtgattgcagtataaaagacaaatatgaaattcattgaattgaatatcc |
47333668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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