View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2857_low_1 (Length: 589)
Name: NF2857_low_1
Description: NF2857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2857_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 10 - 572
Target Start/End: Complemental strand, 4271496 - 4270916
Alignment:
| Q |
10 |
aagaatattagaagatttcagatctctatggatcactgcagggtagcagtgctcatgcagatattttaaacctctgattgacattaatcaatagtttgtt |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4271496 |
aagaatattagaagatttcagatctctatggatcactgcagggtagcagtgctcatgcagatattttaaacctctgattgacattaatcaatagtgtgtt |
4271397 |
T |
|
| Q |
110 |
cagaaacatagacattagagcacataggaaaggaatggaaattgattaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagt |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4271396 |
cagaaacatagacattagagcacataggaaaggaatggaaattgattaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagt |
4271297 |
T |
|
| Q |
210 |
caatgctgagccatgagatggtccttcacataatcaatttttggaaaatagtgattagtattattttatcattgacctcattaacttttgatacgagtct |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4271296 |
caatgctgagccatgagatggtccttcacataatcaatttttggaaaatagtgattagtattattttatcattgacctcattaacttttgatacgagtct |
4271197 |
T |
|
| Q |
310 |
tctattatcaaataataacaataattgaatgtaaccacgaaagttagttgtgtcggacattgacacgtatcagacaacag------------------ac |
391 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || |
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| T |
4271196 |
tctattatcagataataacaataattgaatgtaaccacgaaagttagttgtgtcggacattgacacttaacagacaacagacacgtatcagacaacagac |
4271097 |
T |
|
| Q |
392 |
acaccttcaaattgaaatgtcggtgctataaaggttgacataacaatcattggtgaaatttttccgtaacgattataatcacttatattagtcttaaaag |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4271096 |
acaccttcaaattgaaatgtcggtgctataaaggttgacataacaatcattggtgaaatttttccgtaacgattataatcacttatattagtcttaaaag |
4270997 |
T |
|
| Q |
492 |
cgaaagagcgaaatttagaagagtcaaatccaataaaataagatatcagaaacaatatttttaccatgtaattgagtttcc |
572 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4270996 |
cgaaagagcgcaatttagaagagtcaaatccaataaaataagatatcagaaacaatatttttaccatgtaattgagtttcc |
4270916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 10 - 572
Target Start/End: Complemental strand, 2807840 - 2807260
Alignment:
| Q |
10 |
aagaatattagaagatttcagatctctatggatcactgcagggtagcagtgctcatgcagatattttaaacctctgattgacattaatcaatagtttgtt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2807840 |
aagaatattagaagatttcagatctctatggatcactgcagggtagcagtgctcatgcagatattttaaacctctgattgacattaatcaatagtttgtt |
2807741 |
T |
|
| Q |
110 |
cagaaacatagacattagagcacataggaaaggaatggaaattgattaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2807740 |
cagaaacatagacattagagcacataggaaaggaatggaaattgattaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagt |
2807641 |
T |
|
| Q |
210 |
caatgctgagccatgagatggtccttcacataatcaatttttggaaaatagtgattagtattattttatcattgacctcattaacttttgatacgagtct |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2807640 |
caatgctgagccatgagatggtccttcacataatcaatttttggaaaatagttattagtattattttatcattgacctcattaacttttgatacgagtct |
2807541 |
T |
|
| Q |
310 |
tctattatcaaataataacaataattgaatgtaaccacgaaagttagttgtgtcggacattgacacgtatcagacaacag------------------ac |
391 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
2807540 |
tctattatcagataataacaataattgaatgtaaccacgaaagttagttgtgtcggaccttgacacgtatcagacaacagacacgtatcagacagcagac |
2807441 |
T |
|
| Q |
392 |
acaccttcaaattgaaatgtcggtgctataaaggttgacataacaatcattggtgaaatttttccgtaacgattataatcacttatattagtcttaaaag |
491 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2807440 |
acaccttcaaattgaaacgtcggtgctataaaggttgacataacaatcattggtgaaatttttccgtaacgattataatcacttatattagtcttaaaag |
2807341 |
T |
|
| Q |
492 |
cgaaagagcgaaatttagaagagtcaaatccaataaaataagatatcagaaacaatatttttaccatgtaattgagtttcc |
572 |
Q |
| |
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| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2807340 |
caaaagagcacaatttagaagagtcaaatccaataaaataagatatcagaaacaatatttttaccatgtaattgagtttcc |
2807260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 49124460 - 49124542
Alignment:
| Q |
155 |
ttaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtccttca |
237 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49124460 |
ttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctgagccatgagatggtccttca |
49124542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 11683332 - 11683414
Alignment:
| Q |
155 |
ttaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtccttca |
237 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||| |
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| T |
11683332 |
ttaaggaagttcaccttgctgtgtcaagagcaatcttcattctcatatgccaagtcaatcctgagccatgagattttccttca |
11683414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 18988535 - 18988604
Alignment:
| Q |
165 |
tcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtcct |
234 |
Q |
| |
|
|||||| | ||||||||||| |||||| || |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
18988535 |
tcaccttgttgtgtcaagagaaatcttaattctcatatgccaagtcaatcctgagccatgagatggtcct |
18988604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 30341236 - 30341157
Alignment:
| Q |
155 |
ttaaagaaggtcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtcct |
234 |
Q |
| |
|
|||| |||| |||||| | ||||||||||| |||||| || |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
30341236 |
ttaaggaagttcaccttgttgtgtcaagagaaatcttaattctcatatgccaagtcaatcctgagccatgagatggtcct |
30341157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 23916989 - 23916920
Alignment:
| Q |
165 |
tcacctagctgtgtcaagagcaatcttcatcctcatatgccaagtcaatgctgagccatgagatggtcct |
234 |
Q |
| |
|
|||||| | ||||||||||| |||||| || |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
23916989 |
tcaccttgttgtgtcaagagaaatcttaattctcatatgccaagtcaatcctgagccatgagatggtcct |
23916920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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