View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2857_low_11 (Length: 249)
Name: NF2857_low_11
Description: NF2857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2857_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 21097092 - 21097324
Alignment:
| Q |
1 |
tcatttggatggcgaatcgcgaccaaccggttaacggaaaacgaaccaaactttcccttttaaacacaggaaacattgcattgcttgatgtttcattaaa |
100 |
Q |
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| T |
21097092 |
tcatttggatggcgaatcgcgaccaaccggttaacggaaaacgaaccaaactttcccttttaaacacaggaaacattgtattgcttgatgtttcattaaa |
21097191 |
T |
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| Q |
101 |
caatgtttggtcttcaaacactgcatcattgaaaccattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacatt |
200 |
Q |
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| T |
21097192 |
caatgtttggtcttcaaacactgcatcattgaaaccattagaattgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacatt |
21097291 |
T |
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| Q |
201 |
ttgtggcagagttttgactctccaacagatact |
233 |
Q |
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| T |
21097292 |
ttgtggcagagttttgactctccaacagatact |
21097324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 21106713 - 21106943
Alignment:
| Q |
3 |
atttggatggcgaatcgcgaccaaccggttaacggaaaacgaaccaaactttcccttttaaacacaggaaacattgcattgcttgatgtttcattaaaca |
102 |
Q |
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| T |
21106713 |
atttggatggcaaatcgcgaccaacccgtgaatggaaaacgatccaaacttacccttttaaacactggaaatattgtattgtttgatgtttctttaaaca |
21106812 |
T |
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| Q |
103 |
atgtttggtcttcaaacactgcatcattgaaaccattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacatttt |
202 |
Q |
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| T |
21106813 |
atgttaggtcttcaaacacagcatcattgaaaccactagagttgcatctcaaagatgatggaaatcttgtgttgcgtgagcttcaaggaatcacaatttt |
21106912 |
T |
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| Q |
203 |
gtggcagagttttgactctccaacagatact |
233 |
Q |
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| T |
21106913 |
gtggcagagttttgactctccaacagatact |
21106943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 21131983 - 21131913
Alignment:
| Q |
138 |
ttagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtggca |
208 |
Q |
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| T |
21131983 |
ttagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaagtaccattttgtggca |
21131913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 21124423 - 21124370
Alignment:
| Q |
135 |
ccattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaa |
188 |
Q |
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| T |
21124423 |
ccattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaa |
21124370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 18660147 - 18660091
Alignment:
| Q |
136 |
cattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaa |
192 |
Q |
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| T |
18660147 |
cattagagttgtatctcaaagaagatggtaatcttgtattacgtgagcttcaaggaa |
18660091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 21113026 - 21112970
Alignment:
| Q |
135 |
ccattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaagga |
191 |
Q |
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| T |
21113026 |
ccattagagttgtatcttagagaagatgggaatcttgtgttacgtgagcttcaagga |
21112970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 39130721 - 39130805
Alignment:
| Q |
106 |
tttggtcttcaaacactgcatcattgaaaccattagagttgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaagg |
190 |
Q |
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|||||||||||||||| | |||| | ||| |||||||| |||| ||| | ||||| ||||||||||| |||||||||||||| |
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| T |
39130721 |
tttggtcttcaaacacagaatcaaacactccactagagttgtatctaaaagaagatggcaatcttgtgttacgtgagcttcaagg |
39130805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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