View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2857_low_12 (Length: 241)
Name: NF2857_low_12
Description: NF2857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2857_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 6509159 - 6508944
Alignment:
| Q |
10 |
catcatcaatcacccgccgcgaggccgcgacataaaaactaacaatactaatattatctgcagtggaatatttgcacccctcataagcacaacaaaggct |
109 |
Q |
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| T |
6509159 |
catcctcaatcacccgccacgaggccgcgacataaaaactaacaatactaatattatctgcagtggaatatttgcacccctcataagcacaacaaaggct |
6509060 |
T |
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| Q |
110 |
ttgacaggatctaagtataatggggagtatcttcataagctgataagaaatatgacacaagatacacttttgagccaaactttgacgaacgttgttattc |
209 |
Q |
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| T |
6509059 |
ttgacaggatctaagtataatggggagtatcttcataagctgataagaaatatgacacaggatacacttttgagccaaactttgacgaacgttgttattc |
6508960 |
T |
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| Q |
210 |
catcttttgatgttca |
225 |
Q |
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|||||||||||||||| |
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| T |
6508959 |
catcttttgatgttca |
6508944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 68 - 225
Target Start/End: Complemental strand, 6503569 - 6503412
Alignment:
| Q |
68 |
tgcagtggaatatttgcacccctcataagcacaacaaaggctttgacaggatctaagtataatggggagtatcttcataagctgataagaaatatgacac |
167 |
Q |
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|||||||||||||||||||| || |||| || |||||| || ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
6503569 |
tgcagtggaatatttgcaccgctgataaacataacaaaagcattgacaggagctaagtacaatggagagtatcttcataagctgataagaaatatgacaa |
6503470 |
T |
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| Q |
168 |
aagatacacttttgagccaaactttgacgaacgttgttattccatcttttgatgttca |
225 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
6503469 |
aagatacacttttgagccaaactttgacaaacattgttattccatcttttgatgttca |
6503412 |
T |
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