View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2857_low_14 (Length: 231)
Name: NF2857_low_14
Description: NF2857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2857_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 50111984 - 50112199
Alignment:
| Q |
1 |
tgaaaagtgaatcataccaaaagcccagtaaggcattggagctggtcttccaatgaaggatgtgtactgatcaacaacactaagaggcgtgggtcctgca |
100 |
Q |
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| T |
50111984 |
tgaaaagtgaatcataccaaaagcccagtaaggcattggagctggtcttccaatgaaggatgtgtactgatcaacaacactaagaggcgtgggtcctgca |
50112083 |
T |
|
| Q |
101 |
aagaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccat |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
50112084 |
aagaagtaaaaatcaagtacccctccaataatcttgtacgtcaaagaggtccctttgtaaaacacatccattccattgctattcaacaacaaaacaccat |
50112183 |
T |
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| Q |
201 |
gtgcattaggcttgcc |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
50112184 |
gtgcattaggcttgcc |
50112199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 50121565 - 50121770
Alignment:
| Q |
1 |
tgaaaagtgaatcataccaaaagcccagtaaggcattggagctggtcttccaatgaaggatgtgtactgatcaacaacactaagaggcgtgggtcctgca |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |
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| T |
50121565 |
tgaaaagtgaatcataccaaaagcccaataaggcattggagctggtcttccaatgaaggatgtgtactgatcaacaacattcagaggcgtaggtcctgca |
50121664 |
T |
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| Q |
101 |
aagaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50121665 |
aagaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccat |
50121764 |
T |
|
| Q |
201 |
gtgcat |
206 |
Q |
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|||||| |
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| T |
50121765 |
gtgcat |
50121770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 23931210 - 23931015
Alignment:
| Q |
10 |
aatcataccaaaagcccagtaaggcattggagctggtcttccaatgaaggatgtgtactgatcaacaacactaagaggcgtgggtcctgcaaagaagtaa |
109 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||| || | || ||||||||||| ||| | | ||| || ||||| | ||||||||| |
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| T |
23931210 |
aatcataccaaaagcccagtaaggcatagcagctggtcttccaatcaaagtagtatactgatcaaccacattcaaaggagttggtccagagaagaagtaa |
23931111 |
T |
|
| Q |
110 |
aaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccatgtgca |
205 |
Q |
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||||||| | || ||||||| ||| || |||||||| | ||||| |||||||||||||||||||| ||||||||||| | |||| |||||||| |
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| T |
23931110 |
aaatcaaaaacaccaccaataaccttataagtcaaagaagttcctttataaaacacatccattccattactattcaacaacaaaacagcatgtgca |
23931015 |
T |
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