View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2857_low_2 (Length: 496)
Name: NF2857_low_2
Description: NF2857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2857_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 42325441 - 42325907
Alignment:
| Q |
18 |
aaggacctcatgtcaccaccatcaatctcaactttgggtttggtgttgatagtggaagggaaaaactcatggccattgaagacttgcttcttgttgtaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325441 |
aaggacctcatgtcaccaccatcaatctcaactttgggtttggtgttgatagtggaagggaaaaactcatggccattgaagacttgcttcttgttgtaac |
42325540 |
T |
|
| Q |
118 |
tcacagtcattttcatgcttgtggtaaaggaatcaagaacttctcctatcactcttccaacaatgagtggttcttgagacattcttgccatttcacaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325541 |
tcacagtcattttcatgcttgtggtaaaggaatcaagaacttctcctatcactcttccaacaatgagtggttcttgagacattcttgccatttcacaaaa |
42325640 |
T |
|
| Q |
218 |
gagtgaaaaagagaaaagaaagttgagtggaaacttaagagtacaactcagataactcttcttgttgaggaaaaggagttatgttgagcttcttatttat |
317 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42325641 |
gagtgaaaaagagaaaagaaatttgagtggaaacttaagagtacaactcagataattcttcttgttgagg-aaaggagttatgttgagcttcttatttat |
42325739 |
T |
|
| Q |
318 |
attgtcttaaaagtatctttcaaggttaagtgttatttttcccattttaaatatgttacatgcaagatataatttaattagatctatagaaaagagggat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325740 |
attgtcttaaaagtatctttcaaggttaagtgttatttttcccattttaaatatgttacatgcaagatataatttaattagatctatagaaaagagggat |
42325839 |
T |
|
| Q |
418 |
tctatagggtgtaaaaatacaggttcaggtgctcccaccactcttgatattggtttggttctgttcat |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42325840 |
tctatagggtgtaaaaatacaggttcaggtgctcccaccactcttgatattggtttggttctgttcat |
42325907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 36278866 - 36278975
Alignment:
| Q |
24 |
ctcatgtcaccaccatcaatctcaactttgggtttggtgttgatagtggaagggaaaaactcatggccattgaagacttgcttcttgttgtaactcacag |
123 |
Q |
| |
|
||||| |||||||||| ||||| |||||| ||||| ||| | | | |||||| ||||||||||| |||||| | |||||||| |||||||| | |||| |
|
|
| T |
36278866 |
ctcatatcaccaccatgaatctgaactttaggtttagtggtaactgaggaaggaaaaaactcatgaccattgtaaacttgcttagtgttgtaagtgacag |
36278965 |
T |
|
| Q |
124 |
tcattttcat |
133 |
Q |
| |
|
||||||||| |
|
|
| T |
36278966 |
acattttcat |
36278975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 26206495 - 26206592
Alignment:
| Q |
90 |
ccattgaagacttgcttcttgttgtaactcacagtcattttcatgcttgtggtaaaggaatcaagaacttctcctatcactcttccaacaatgagtgg |
187 |
Q |
| |
|
|||||||||| || || ||||||||| ||||||||||||| || ||| |||||| | |||| ||| |||||||||||||| |||| ||| ||||| |
|
|
| T |
26206495 |
ccattgaagatttctttgttgttgtaagtcacagtcatttttgtggttggggtaaaatagtcaataacatctcctatcactctcccaagaattagtgg |
26206592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University