View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2857_low_3 (Length: 430)
Name: NF2857_low_3
Description: NF2857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2857_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Complemental strand, 45513124 - 45512707
Alignment:
| Q |
16 |
aaaacgacatcgatatccc-tctagtttcgaaactaacattaacctcccgtaaattttaatcaaatagacaatcaccccgtctctattaacagttaattt |
114 |
Q |
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| T |
45513124 |
aaaacgacatcgacaccccctctagtttcgaaactaacattaacctcccgtaagttttaatcaaatagacaatcaccccgtctctattaacagttaattt |
45513025 |
T |
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| Q |
115 |
ttccgttaactcttcttagagaatcttctgttaacat--tgtggggacaaaccttcattgttgaatctaagtcaatccattaatatcatcaaccaaacat |
212 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45513024 |
ttccgttaactcttcttaaagaatcttctgttaacatattgtggggacaaaccttcattgttgaatctaagtcaatccattaatatcatcaaccaaacat |
45512925 |
T |
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| Q |
213 |
ttaagaaaccttacagattagaatagtaatgggtttgtaacattttggcattccctctcaaaactgaaacataggtgtattcctaatttttaaatccttg |
312 |
Q |
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| T |
45512924 |
ttaagaaaccttacagattataatagtaatgggtttgtaacattttggcattccctctcaaaactgaaacataggtgtattcctaatttttaaatccttg |
45512825 |
T |
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| Q |
313 |
tcttctaatcactggtctcgtcaccttcctaattcatttttgccctcggtttaagcttttctccgtcacatgtcgatgctctcttcattcccatggatct |
412 |
Q |
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| T |
45512824 |
tcttctaatcactggtctcgtcaccttcctaattcatttttgccctcggtttaagcttttatccgtcacatgtcgttgctctcttcattcccatggatct |
45512725 |
T |
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| Q |
413 |
tgtttgtatgctttcacc |
430 |
Q |
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| T |
45512724 |
tgtttgtatgctttcacc |
45512707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 32 - 331
Target Start/End: Complemental strand, 35744568 - 35744277
Alignment:
| Q |
32 |
ccctctagtttcgaaactaacattaacctcccgtaaattttaatcaaatagacaatcaccccgt-ctctattaaca--gttaatttttccgttaactctt |
128 |
Q |
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||||||| |||| ||||||||||||||||||| | ||||||||||||||| |||| ||||| | ||||||||||| |||||||||||| |||| | || |
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| T |
35744568 |
ccctctaatttcaaaactaacattaacctcccttgaattttaatcaaataaacaaacaccctattctctattaacaccgttaatttttcccttaattttt |
35744469 |
T |
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| Q |
129 |
-cttagagaatcttctgttaacattgtggggacaaaccttcattgttgaatctaagtcaatccattaatatcatcaaccaaacatttaagaaaccttaca |
227 |
Q |
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| T |
35744468 |
tcttaaagaatcttctattaaaattgtggggacaaaccttcattgttgaatcga-gtcaatccactaatatcatcaa------------gaaaccctaca |
35744382 |
T |
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| Q |
228 |
g-attagaatagtaatgggtttgtaacattttggcattccctctcaaaactgaaacataggtgtattcctaatttttaaatccttgtcttctaatcactg |
326 |
Q |
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| T |
35744381 |
gcattagaatagtaatgggtttgtaacattttggcattccctctcaaaactgaaacgtaagtgtattcctaactttttaattattgtcttctaatcacta |
35744282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 26126739 - 26126683
Alignment:
| Q |
244 |
ggtttgtaacattttggcattccctctcaaaactgaaacataggtgtattcctaatt |
300 |
Q |
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| T |
26126739 |
ggtttgtaaccttttggcgtttcctctcaaaactgaaacataagtatattccaaatt |
26126683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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