View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2857_low_4 (Length: 399)
Name: NF2857_low_4
Description: NF2857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2857_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 384
Target Start/End: Complemental strand, 4757642 - 4757274
Alignment:
| Q |
14 |
catcatcattgcgaagtattccccgactttaccgatgattaatttctgaaggaaattcgaccgattacctttaatgagatctttccttctaacaannnnn |
113 |
Q |
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| T |
4757642 |
catcatcattgtgaagtattccccgactttaccgatgattaatttctgaaggaaattcgaccgattacctttaatgatatctttccttctaacaaatttt |
4757543 |
T |
|
| Q |
114 |
nnnnnnnatccataaaattcaacctaagatcttatttaaaagaaaggacagaaatctgagtcaagttccattcaaccgatatacttagttgataaattca |
213 |
Q |
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| T |
4757542 |
ttttt--atccataaaattcaacctaagatcttatttaaaagaaaggacagaaatctgagtcaagttccattcaaccgatatacttagttgataaattca |
4757445 |
T |
|
| Q |
214 |
atatcattattactagctacataatttatttgcggtctctatgatgcatggcatggtgtgacattgataaatacgtgtacatgtcttaccctctggagcg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4757444 |
atatcattattactagctacataatttatttgcggtctctatgatgcatggcatggtgtgacattgacaaatacgtgtacatgtcttaccctctggagcg |
4757345 |
T |
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| Q |
314 |
gtgctgattcaacaataaattgacctttgatcctgattctatttaaggtacggtatatttgccttagaaac |
384 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4757344 |
gtgctggttcaacaataaattgacctttgatcctgattctatttaaggtacggtatatttgccttagaaac |
4757274 |
T |
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