View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2857_low_5 (Length: 396)
Name: NF2857_low_5
Description: NF2857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2857_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 380
Target Start/End: Original strand, 35883905 - 35884278
Alignment:
| Q |
7 |
gtgagatgaaattcgccggtgaattcagcgttaacgatattttcaagcatcatagtgaggtcaaggtttgattgagtaagaagggaggtgtatttagtaa |
106 |
Q |
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| T |
35883905 |
gtgatatgaaattcgccggtgaattctgcgttaatgatattttcaagcatcatagtgaggtcaaggtttgattgagtaagaagggaggtgtatttagtaa |
35884004 |
T |
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| Q |
107 |
tatctttacgaacattccagaagattctagaattatcaggctgagcggtgcttgttcgaagaagctcgacgccggcgagccataaggcggcgatacggtc |
206 |
Q |
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| T |
35884005 |
tatctttacgaacattccagaagattctagaattatcaggctgagcggtgcttgttcggagaagctcgacgccggcgagccataaggcggcgatacggtc |
35884104 |
T |
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| Q |
207 |
gtattgttcgcctttgattttggcgtggaagtgaaggatgacacgtgtccatggtggagggcaatggaagggtggggtgtatggcgtggtaaaannnnnn |
306 |
Q |
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| T |
35884105 |
gtattgttcgcctttgattttggcgtggaagtgaaggatgacacgtgtccatggtggagggcaatggaagggtggggtgtatggtgtggtaaaagggggg |
35884204 |
T |
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| Q |
307 |
ntgtcgatagtgttggcgaatgtgtggtggaggatttggtgggaacatgatggggttggttggtagggtggtgg |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35884205 |
gtgtcgatagtgttggcgaatgtgtggtggaggatttggtgggaacatgatggggttggttggtagggtggtgg |
35884278 |
T |
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