View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2857_low_9 (Length: 285)
Name: NF2857_low_9
Description: NF2857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2857_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 11860929 - 11861203
Alignment:
| Q |
1 |
tctcccaccaatggatcagcttccacgtctcaaggttctccaacttcgtagattggactctttgaaattcattgcaaagaacaatcaagataatacnnnn |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
11860929 |
tctcccaccaatggatcagcttccacatctcaaggttctccaacttcggagattggactctttgaaattcattgcagagaacaatcacactaatacacca |
11861028 |
T |
|
| Q |
101 |
nnnttctttccatgcttgaaggaacttacaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatatcggaaaaagatagaccatctttca |
200 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
11861029 |
aaattctttccatccttgaaggaacttgcaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatacgggaaaatgatagaccatctttca |
11861128 |
T |
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| Q |
201 |
gttgcatttcaaagctaaatatccaatattgtcctcagttagcttgcatgccgctatatcccggtcttgatgatg |
275 |
Q |
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| T |
11861129 |
gttgcatttcaaagctaaatatccaatattgtcctcagttagcttccatgccactatatcccggtcttgatgatg |
11861203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 11828797 - 11829071
Alignment:
| Q |
1 |
tctcccaccaatggatcagcttccacgtctcaaggttctccaacttcgtagattggactctttgaaattcattgcaaagaacaatcaagataatacnnnn |
100 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| | |||| |
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| T |
11828797 |
tctcccaccaatggatgagcttccacatctcaaggttctccaacttcggagattggactctttgaaatttattgcaaagaacaatcaagctgatacacct |
11828896 |
T |
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| Q |
101 |
nnnttctttccatgcttgaaggaacttacaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatatcggaaaaagatagaccatctttca |
200 |
Q |
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| T |
11828897 |
atattctttccatccttgaaggaactaacaatctcagattgtcttaaactaaaaggttggtgggaaaatgacatatgggacaatgatagaccatctttca |
11828996 |
T |
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| Q |
201 |
gttgcatttcaaagctaaatatccaatattgtcctcagttagcttgcatgccgctatatcccggtcttgatgatg |
275 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||||||||||||||||| |
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| T |
11828997 |
gttgcatttcaaagctaaatatccaatactgtcctcaattagcttgcatgctgctctatcccggtcttgatgatg |
11829071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 107 - 275
Target Start/End: Complemental strand, 11901477 - 11901309
Alignment:
| Q |
107 |
tttccatgcttgaaggaacttacaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatatcggaaaaagatagaccatctttcagttgca |
206 |
Q |
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||||||| |||||||||||||||||| || |||||||||||||| ||||||||||||||||| || || | || || |||||||||| ||||||||||| |
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| T |
11901477 |
tttccatccttgaaggaacttacaatttcggattgtcctaatctgaaaagttggtgggaaaatgagatttggggtaatgatagaccatatttcagttgca |
11901378 |
T |
|
| Q |
207 |
tttcaaagctaaatatccaatattgtcctcagttagcttgcatgccgctatatcccggtcttgatgatg |
275 |
Q |
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| T |
11901377 |
tttcaaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatg |
11901309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 107 - 275
Target Start/End: Original strand, 12039824 - 12039992
Alignment:
| Q |
107 |
tttccatgcttgaaggaacttacaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatatcggaaaaagatagaccatctttcagttgca |
206 |
Q |
| |
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||||||| ||||||||||||||||||||| |||||||| |||||||| ||||||||||||| || |||| ||| || |||||||||||||||||||||| |
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| T |
12039824 |
tttccatccttgaaggaacttacaatctcggattgtccaaatctaaacagttggtgggaaactgagatatgggataatgatagaccatctttcagttgca |
12039923 |
T |
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| Q |
207 |
tttcaaagctaaatatccaatattgtcctcagttagcttgcatgccgctatatcccggtcttgatgatg |
275 |
Q |
| |
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|||| || |||||| |||||||||| || |||||||||||||||| |||||||| ||||||||||| |
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| T |
12039924 |
tttccaaactaaatgtccaatattgccccaagttagcttgcatgccactatatcctaatcttgatgatg |
12039992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 11901604 - 11901516
Alignment:
| Q |
1 |
tctcccaccaatggatcagcttccacgtctcaaggttctccaacttcgtagattggactctttgaaattcattgcaaagaacaatcaag |
89 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||||||||||| |||| ||| |||||||| |||||||||||||| | |||||||||| |
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| T |
11901604 |
tctccccccaatggatcagcttccacatctcaaggttctccaaattcggagactggactctctgaaattcattgcagaaaacaatcaag |
11901516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 12039697 - 12039785
Alignment:
| Q |
1 |
tctcccaccaatggatcagcttccacgtctcaaggttctccaacttcgtagattggactctttgaaattcattgcaaagaacaatcaag |
89 |
Q |
| |
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|||||| ||||||||| ||||||||| ||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||||| |
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| T |
12039697 |
tctcccgccaatggatgagcttccacatctcaaggttctccaacttcgaaggttggactcactgaaattcattgcaaaaaacaatcaag |
12039785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 11732725 - 11732876
Alignment:
| Q |
104 |
ttctttccatgcttgaaggaacttacaatctcagattgtcctaatctaaaaagttggtgggaaaaag---acatatcggaaaaagatagaccatctttca |
200 |
Q |
| |
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||||||||| ||||||||| |||||||| || ||||||||||| || |||||||||||||||| | | | || | ||||| | |||||||||||| |
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| T |
11732725 |
ttctttccagccttgaaggagcttacaatttcggattgtcctaaactcgaaagttggtgggaaaatgataagacattgaaaaaaaacagaccatctttcc |
11732824 |
T |
|
| Q |
201 |
gttgcatttcaaagctaaatatccaatattgtcctcagttagcttgcatgcc |
252 |
Q |
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|||||||||||| |||||||||| || ||||||| | ||||| ||| |||| |
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| T |
11732825 |
cttgcatttcaaaactaaatatccgatgttgtcctaaattagcatgcgtgcc |
11732876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 11973793 - 11973736
Alignment:
| Q |
106 |
ctttccatgcttgaaggaacttacaatctcagattgtcctaatctaaaaagttggtgg |
163 |
Q |
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|||||||| ||| ||||||| ||||||||||||||||||||||| || || |||||| |
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| T |
11973793 |
ctttccatctttggaggaactcacaatctcagattgtcctaatctcaagaggtggtgg |
11973736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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