View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2858_high_13 (Length: 285)
Name: NF2858_high_13
Description: NF2858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2858_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 140 - 262
Target Start/End: Complemental strand, 41348628 - 41348506
Alignment:
| Q |
140 |
agtacaacacagataagctaaccgatagtataaaaaataagtgcaataaaacagaattttattggcttctaatttctttcattagagctgattttacctg |
239 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41348628 |
agtacaacacagatatgctaaccgatagtataaaaaataagtgcaataaaacagaattttattggcttctaatttctttcattagagctgattttacctg |
41348529 |
T |
|
| Q |
240 |
tatacttattctataggtacacg |
262 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
41348528 |
tatacttattctataggtacacg |
41348506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 41348768 - 41348686
Alignment:
| Q |
1 |
catcggagcatgttccatttctgtcatgtttgccactctttgctgacacactcttatctactgcacttttcatctcctctcaa |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41348768 |
catcggagcatgttccatttctgtcatgtttgccactctttgctgacacactcttatctactgcacttttcatctcctctcaa |
41348686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University